FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001836436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27046774
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCACA2636200.9746818603948848No Hit
GGACTA2635460.9744082602975127No Hit
ACTAAT2617750.967860344453649No Hit
GGCTAC2562060.9472700884770954No Hit
TCTTCA2518790.9312718773780563No Hit
GCTCAA2510160.92808110867492No Hit
GAGAAG2458350.9089254045602629No Hit
GAGCAC2456210.9081341826570518No Hit
ATTCAT2448200.9051726464679299No Hit
TCAATG2431710.8990758010548688No Hit
ACAGCC2407690.8901948897861164No Hit
AGTGCA2375870.8784300855991181No Hit
AACATA2371440.8767921823134989No Hit
CGAATT2332120.8622544041666486No Hit
CCTTAT2325920.8599620790265043No Hit
TAGCTT2244970.8300324467531692No Hit
TACAGT2232690.8254921640562383No Hit
AACCTT2179420.8057966543440634No Hit
CTTAGC2135620.7896024864185283No Hit
CTGTTC2133030.788644886077726No Hit
CCTGCT2112490.7810506347263448No Hit
GAAGAT2094580.7744287729102184No Hit
GCCAAT2094230.7742993674587586No Hit
TCTCGC2080020.7690455061294925No Hit
TGCATA2073480.7666274728365017No Hit
TTCTAC2063370.7628895039386213No Hit
CTTCAC2038560.7537165060794312No Hit
ACCAGG2034020.7520379325090675No Hit
ATGGCC2020340.7469800280062975No Hit
GAATAC2008910.7427540156914831No Hit
GTCTCA1986520.7344757640966719No Hit
GAGATA1983710.7334368231863808No Hit
ATTGAA1965230.7266042153493056No Hit
TGTGAT1960860.7249884958553652No Hit
GTAAGA1960220.7247518687441246No Hit
TTACGT1938410.7166880604688752No Hit
ACTTGA1922160.7106799502225293No Hit
GAGTCG1897190.7014477955855289No Hit
TCATGT1850970.6843588813956148No Hit
CCTCGG1840730.6805728476157638No Hit
GCACAT1827510.6756850188491981No Hit
GATCAG1810250.6693034814429255No Hit
AACTCT1800180.6655803017394977No Hit
CATGAG1781640.6587255101107437No Hit
CAGATC1772230.6552463521157829No Hit
TCGTGG1771260.6548877141503087No Hit
GTCTGC1766740.6532165351771712No Hit
TGATAA1759840.6506653991341075No Hit
GGTAAT1749140.6467092896180521No Hit
ATCCGG1740860.6436479263663755No Hit
CGTCAG1737160.6422799258795153No Hit
ATGCCG1721700.6365639022236071No Hit
GACTTG1721700.6365639022236071No Hit
GCTTCT1713450.63351363086777No Hit
CAGCCT1706840.6310697164844872No Hit
CAGTAG1687580.6239487193555875No Hit
CTGAGG1674130.6189758527209197No Hit
CTGTAT1652260.6108898606539915No Hit
CGACAA1644630.6080688218121688No Hit
AAGGCG1644170.6078987460759646No Hit
TCCAGA1637570.6054585289912948No Hit
AAGAGG1629110.6023306143645819No Hit
CAGTCC1628330.6020422250727573No Hit
GCTGTC1626190.6012510031695462No Hit
TCCTCC1622010.5997055323492554No Hit
CTGGAG1614070.5967698772504255No Hit
AGTTAG1607710.5944183953324711No Hit
TTAGTA1602950.5926584811926183No Hit
GACACG1587500.5869461548353234No Hit
GGTACC1565530.5788231897822639No Hit
CTATTA1564640.5784941302056948No Hit
GTGGTG1558740.5763127240239446No Hit
TACGGC1555250.5750223668079602No Hit
AGGCTT1549720.572977760674896No Hit
GGCCAG1529320.5654352715040988No Hit
TTGAAT1514660.5600150317372415No Hit
GGCGTT1512840.5593421233896508No Hit
TAGAGC1507940.5575304470692142No Hit
CCGTCG1506850.5571274415203825No Hit
ATCCAC1494680.5526278291081961No Hit
TCAAGC1481470.5477436976402436No Hit
AACTAG1481040.5475847137998787No Hit
CCATGA1470710.5437654043325093No Hit
TCCACG1458190.5391363864688632No Hit
CGTACT1454520.5377794778778423No Hit
CATACG1450200.5361822448769675No Hit
GAGCCA1442250.5332428924795246No Hit
TGACCA1436560.5311391295686503No Hit
TGTGTG1432200.529527107373323No Hit
CACATT1427630.5278374419071199No Hit
AGATGC1422240.5258445979546396No Hit
GCGCAG1419460.5248167489401878No Hit
CGTTGC1410940.5216666505217961No Hit
CAAGGA1396160.5162020431715812No Hit
CGTGAA1387480.5129927879753793No Hit
CCACTT1386730.512715490579394No Hit
ACGTAA1379530.5100534355779363No Hit
AGGACT1364440.5044742119707142No Hit
GTACTT1344770.4972016255986758No Hit
GACCAT1342360.49631057663291006No Hit
AATGTA1336630.49419202452758326No Hit
CGTCTC1308120.4836510261815328No Hit
CCGGAA1304400.48227563109744626No Hit
CAGGAC1287200.4759162774828525No Hit
GCCATA1275700.4716643840777462No Hit
CCAGCG1261060.46625153890811527No Hit
ACTAGC1254010.46364494338585444No Hit
GGCCGT1241260.4589308876541061No Hit
GTTGGC1225240.45300781527586254No Hit
CATAAC1220590.45128857142075424No Hit
AACAAT1213580.44869676509294604No Hit
ACCGCT1193750.4413650219430975No Hit
GACCGA1187220.4389506859487198No Hit
ACGAAC1159360.42865001201252323No Hit
CAACGG1153690.4265536436988751No Hit
TATAAG1146030.4237215129612131No Hit
ACACGA1121780.4147555638243585No Hit
CTCGTC1116690.41287363883027234No Hit
GAACCG1105190.40862174542516605No Hit
TAAGTC1100100.4067398204310799No Hit
AATTGC1097000.40559365786100776No Hit
TTCTGT1090720.4032717543319584No Hit
GATTCA1089130.4026838838524698No Hit
CGAAGC1079810.39923800154502714No Hit
CCGCTC1072430.3965093951685329No Hit
AGACGG1047970.38746580276080245No Hit
CTCCGC1043540.38582789947518326No Hit
GACTAA1030160.3808809139308074No Hit
GCATAA1023230.37831868599190427No Hit
AATCGG1021580.3777086317207368No Hit
GCCTGG1003260.37093518066147185No Hit
TATTCT994270.3676113092082627No Hit
TTCCAT987320.3650416866721332No Hit
CGATGT975540.36068626890585914No Hit
TGGCAT973950.36009839842637054No Hit
CGAGCC965360.35692241891768683No Hit
TATGGT931520.34441076041083496No Hit
GGTGGT930860.34416673870236797No Hit
AAGCGC924090.341663667541275No Hit
GTTACA911280.3369274280178479No Hit
GGATTC899200.33246109129317974No Hit
AGTAGG867410.32070737900202073No Hit
TAATGA851310.31475472823487194No Hit
GTCGAG847680.3134126088383036No Hit
GGCAGG847300.3132721114910044No Hit
TACGAA846140.31284322485188065No Hit
GTACGC843730.31195217588611496No Hit
TCGGAC841320.31106112692034915No Hit
TACTCG834410.30850629357867226No Hit
AGTTCC830160.3069349416680895No Hit
TCTCTG826480.3055743357784555No Hit
CTATGC826370.305533665493711No Hit
CGCTTG823480.3044651461945147No Hit
CCTGAC822460.3040880217359749No Hit
ATCAGC821430.3037071999788219No Hit
TTCGTT818540.30263868067962557No Hit
TTAGCG812270.3003204744491894No Hit
ATTGCT806370.29813906826743924No Hit
TTAGGC800370.29592068909955765No Hit
ACAGTG798690.29529954293255084No Hit
ATTCGA797750.29495199686291607No Hit
CTAGTT791050.292474806792115No Hit
AAGCAT766060.2832352575578884No Hit
ATACCT763410.2822554734254074No Hit
GAGTGA761590.28158256507781665No Hit
CTACCG753390.27855078021504526No Hit
CGAGAG738050.27287912414249477No Hit
AGTCAA737860.2728088754688452No Hit
AGAGGT728080.2691929174251983No Hit
ATGTGA725570.2682648954733012No Hit
AGGTCA722410.26709654911155023No Hit
TGACAC708650.26200906621987524No Hit
AGCCTA704130.26033788724673784No Hit
TGCGAC701070.25920651387111826No Hit
AAGTTG695120.25700662119630235No Hit
ACCTGC692540.25605271815411335No Hit
CCGACT681980.25214837081864183No Hit
GGATCG677190.2503773647829497No Hit
AGAACG675710.2498301645882056No Hit
GGAGGC670770.24800369907331649No Hit
AGGTGT669580.2475637205383533No Hit
GCGTAT628970.23254899087040842No Hit
CAAGCT627730.23209052584237957No Hit
CACCTA623080.2303712819872714No Hit
TGCGGA617210.22820096770136059No Hit
GATCCT603900.22327986324727675No Hit
ACGCTA584670.2161699580142164No Hit
TATTGG554230.20491538103583076No Hit
GCGGCT474560.17545900298497705No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)