FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001836452

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836452
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24584938
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCAGC7821623.1814682632105886No Hit
TACTCG6975912.8374730902311No Hit
ATTGCT6145192.499575146376208No Hit
TCATGT5907422.40286145932115No Hit
AAGCGC5399412.196226811716995No Hit
CTCCGC5130962.087033939235478No Hit
TCCAGA4864051.9784674665439466No Hit
GATTCA4795921.9507553771337556No Hit
ACTTGA4748121.9313125784575904No Hit
CGTCTC4380931.7819569038571503No Hit
AATTGC4377691.780639023779519No Hit
AGGTGT4284231.7426238780834022No Hit
GGTAAT4219691.7163720323394756No Hit
GATCAG4144101.6856255647258498No Hit
GGCTAC4080771.6598658902454828No Hit
CTGAGG4007881.6302176560298829No Hit
TGTGAT3963451.6121456153356986No Hit
GCGCAG3933261.5998657389333255No Hit
TCTTCA3927131.5973723423666961No Hit
TCTCGC3858971.569648050363194No Hit
CCACTT3824961.5558143770791695No Hit
CAGATC3765101.5314661358918213No Hit
CGCTTG3706781.5077442944944583No Hit
ACTAAT3576071.4545775954366857No Hit
CGATGT3548651.4434244251500654No Hit
AGAGGT3510671.4279759420178322No Hit
CTTAGC3467601.4104570855537646No Hit
TTCACA3415571.3892937212206922No Hit
TTCTAC3326201.3529421957460295No Hit
CTACCG3311501.3469629250234432No Hit
TGACCA3273541.3315225769534176No Hit
ACAGTG3128681.2726003213837676No Hit
GGCCGT3002981.2214714554089987No Hit
GCCAAT2954331.2016829165890106No Hit
TTAGGC2929431.1915547641405482No Hit
TGCGAC2848891.1587948686305412No Hit
ATTCAT2826051.1495046275894614No Hit
TTCTGT2825511.1492849809098562No Hit
ATGTGA2779081.130399433994912No Hit
GTGGTG2759091.1222684393184152No Hit
TATAAG2730381.1105905575194048No Hit
ATTCGA2694191.0958701624547518No Hit
CGTACT2651841.078644168230158No Hit
GCTCAA2626411.0683004366331939No Hit
GCCTGG2507951.0201164631775763No Hit
TAGCTT2437140.991314275431567No Hit
GTCGAG2433560.9898580992964066No Hit
TCGGAC2350850.956215549536875No Hit
CCAGCG2149440.8742914055752347No Hit
AGAACG2138000.8696381499924872No Hit
CCGGAA2123740.8638378506384681No Hit
CTGTAT2073500.8434025743729758No Hit
TGATAA2067590.8409986634906299No Hit
CTAGTT2047750.8329286817806902No Hit
GTCTGC2037850.8289018259879279No Hit
AACATA2027880.8248464974774392No Hit
GTCTCA1954510.7950030217688571No Hit
ATTGAA1807150.735063883423257No Hit
AGGTCA1795360.7302682642518765No Hit
GACCAT1563320.6358852725192962No Hit
GACTAA1482500.6030114861383827No Hit
ATACCT1473290.5992652899917827No Hit
CTTCAC1389200.5650614209399267No Hit
TTAGCG1344280.5467900712216561No Hit
GCGTAT1301270.5292956199442114No Hit
GAACCG1263560.5139569601517807No Hit
TAGAGC1237810.5034830675594952No Hit
AACTCT1235890.5027021015875656No Hit
AGTTCC1162800.4729725167498897No Hit
CCTGAC1151880.4685307727845399No Hit
GTACTT1044230.4247438004521305No Hit
ACCAGG1039750.422921546517628No Hit
CCGCTC1025020.41693007320173026No Hit
GCTGTC1012220.411723633388866No Hit
GACACG975500.39678765917571157No Hit
TGACAC971080.3949898104278319No Hit
TGCGGA968490.3939363198719476No Hit
CAAGGA930170.3783495406821852No Hit
TTCCAT926620.3769055671403361No Hit
CATGAG899930.3660493266242933No Hit
AGTGCA892880.36318171719611414No Hit
TCCTCC872690.35496937189754146No Hit
TACAGT860150.349868687893376No Hit
GTTGGC756490.30770466047138295No Hit
TACGAA755230.3071921515523041No Hit
GGCAGG741300.3015260807247104No Hit
GCCATA690810.2809891161816231No Hit
GCGGCT686280.27914652459160155No Hit
CGACAA510820.2077776238443229No Hit
CAGTCC509050.20705767083895027No Hit
GACTTG482020.19606313426537825No Hit
AGTTAG468950.19074687111271135No Hit
CGAAGC379140.1542163742694816No Hit
CCGTCG337680.13735239031312585No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)