FastQCFastQC Report
Wed 27 Sep 2023
EGAF00001836456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences372170592
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCT91484352.458129469831942No Hit
GGCTAC76524102.056156548768904No Hit
TGTGAT68546191.8417949046334106No Hit
CCACTT67923581.8250657483437058No Hit
GCCATA66758861.7937704223551332No Hit
CCGGAA61589201.6548647669614904No Hit
GAAGAT58010071.5586956961929974No Hit
TCGTGG57417661.5427779957423398No Hit
CGTACT57223501.5375610333016316No Hit
GCGCAG57129321.5350304733373452No Hit
TAGCTT57109441.5344963096923037No Hit
CCAGCG54241771.4574437412830297No Hit
TGCATA53701991.4429401772830026No Hit
GCTCAA53550721.4388756433501333No Hit
GCACAT50720811.3628376634336545No Hit
GTGGTG50080261.3456264701322773No Hit
ACTAGC49679301.3348529160520022No Hit
ACTTGA49212281.3223043694973085No Hit
ATCCGG48702541.3086079622325453No Hit
CGTTGC48226711.2958226962757982No Hit
AGTTAG48027241.290463057328291No Hit
AACCTT47244371.269427811211908No Hit
CAGATC47220231.268779183928643No Hit
CTGTTC46440311.2478232025382596No Hit
CAGGAC46123601.2393133952937367No Hit
GATCAG46086791.2383243327296531No Hit
CCATGA45913311.233663029452902No Hit
CCGTCG45557211.2240948365957942No Hit
GGTACC45326551.2178971411045825No Hit
TCAATG44685891.2006829921693545No Hit
AGGACT44315331.1907262678078552No Hit
CGAGCC44243841.1888053744987999No Hit
GCTTCT44088821.1846400803210158No Hit
GAGCAC44077211.1843281266027597No Hit
GACTTG43696971.174111306462387No Hit
CAGTCC43028781.1561574429824912No Hit
ACGAAC42208541.134118087438784No Hit
CATACG41653501.1192044964154502No Hit
ACACGA40082411.0769902528999389No Hit
TCATGT38588041.036837429648391No Hit
TCCACG38366571.030886663930717No Hit
CGAAGC37855701.0171598942454863No Hit
TTCTAC37833441.016561781431672No Hit
CTGAGG33105270.8895186968453435No Hit
TTAGTA32930590.8848251502902196No Hit
AAGAGG31611310.8493768900472394No Hit
GCCAAT25525420.6858526855340574No Hit
CGATGT25199840.6771045467235628No Hit
TTAGGC23816410.6399326145575737No Hit
GATCCT23297990.6260029809125811No Hit
TGCGAC22864740.614361813950093No Hit
TGGCAT22402750.6019484204705782No Hit
AGGCTT20562030.5524893809987007No Hit
CTATTA20209390.5430141562609009No Hit
AGAACG19783540.5315718228483781No Hit
AGTGCA19590720.5263908654018532No Hit
ACAGTG18880270.5073015011352643No Hit
ATTGCT18574810.4990939746254857No Hit
TGACCA18365620.4934731651231594No Hit
TTCACA17787490.47793915968513706No Hit
TTCCAT17375040.46685687621444305No Hit
AAGCAT16361270.4396174859511737No Hit
TGTGTG16057850.43146477301462877No Hit
CGCTTG15737420.42285501160715033No Hit
ATGTGA15379120.4132277060730258No Hit
TCAAGC14416800.38737074636998725No Hit
AGATGC14325430.3849156894158902No Hit
ATTCGA14306260.38440060304388585No Hit
TCGGAC14249100.3828647482173981No Hit
GAACCG14087660.37852695250032004No Hit
TACGAA13970550.375380277225128No Hit
GACCGA13930860.37431383079294994No Hit
AATGTA13550700.3640991602044688No Hit
TAAGTC13287710.35703277705509845No Hit
CACCTA12848280.3452255572089909No Hit
AATTGC12823470.34455892742863464No Hit
AAGTTG12173430.32709274353412643No Hit
ACCTGC11935850.3207091118042986No Hit
CGAGAG11891870.31952739565193805No Hit
GATTCA11699570.3143604102927079No Hit
CTACCG11228930.30171459651492294No Hit
GAGCCA11129530.29904377828971507No Hit
GGATCG11038920.29660914207858746No Hit
TATTGG10866130.2919663786869006No Hit
TAATGA10335410.2777062514385876No Hit
TTCGTT10213300.2744252291701758No Hit
CGACAA10174940.2733945190381942No Hit
CATAAC10059100.2702819678992799No Hit
CATTAA10016600.2691400184569123No Hit
CTATGC9773400.26260538070670564No Hit
CAAGCT9465010.25431912685890024No Hit
AGGTCA9388130.25225340749115394No Hit
GCCTGG8269020.2221835947747317No Hit
AAAAAA6821690.1832947080353947No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)