FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001836474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15564889
Sequences flagged as poor quality0
Sequence length6
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCT3534912.2710794789477777No Hit
GTAAGA3182022.0443576565178203No Hit
TTACGT3106621.9959152937100932No Hit
GAGATA2993961.9235344370268237No Hit
GTACGC2945161.8921818202494087No Hit
GAGAAG2940191.8889887361226925No Hit
TGATAA2667041.7134976034843552No Hit
ATTGAA2494271.6024977756025116No Hit
ACGCTA2450661.5744795867159735No Hit
ATTGCT2450271.574229022770416No Hit
ATTCGA2354141.5124682225488406No Hit
GGAGGC2304291.480441010533387No Hit
TTGAAT2296771.47560962368572No Hit
CGTGAA2295701.4749221790145757No Hit
AATTGC2287601.469718158606849No Hit
GGACTA2236841.4371062973850954No Hit
ATCCAC2171481.3951143499963283No Hit
CTGGAG2142371.376412000111276No Hit
GTCTGC2111551.3566110236957039No Hit
TGTGAT2097881.347828436168096No Hit
CGTCAG2067651.328406518029136No Hit
CTGTAT2059771.3233438413855698No Hit
TATTCT2044571.3135782722253913No Hit
CTGAGG2042721.3123896996631328No Hit
ATTCAT1986181.2760643522738904No Hit
TTCCAT1980241.2722480706415575No Hit
CACATT1967851.2642878468327015No Hit
AGTCAA1940381.2466391504623002No Hit
CTAGTT1934721.2430027608934442No Hit
CTCGTC1901581.2217112502376342No Hit
GGATTC1895511.2178114472901156No Hit
CCACTT1893591.2165779017119878No Hit
AAGGCG1891331.2151259157710665No Hit
TTCTGT1876641.2056880071550784No Hit
ACTAAT1852221.1899988493332654No Hit
CAGTCC1837921.1808115046628345No Hit
ATACCT1831991.1770016477470544No Hit
CGAATT1803241.158530587657901No Hit
ACCAGG1732021.112773756369223No Hit
TCGGAC1725731.108732609657544No Hit
TCTCTG1722161.1064389858482127No Hit
GATTCA1710301.0988192720166523No Hit
GACCAT1699641.091970524171422No Hit
AGTGCA1695321.0891950466206344No Hit
GCCATA1659261.0660275187314217No Hit
GACTAA1644451.0565125135168005No Hit
TTCTAC1626051.0446910350597425No Hit
GACTTG1614661.0373732829061615No Hit
ATCAGC1613921.036897853881258No Hit
AGGACT1593571.023823555696414No Hit
TGCGGA1580391.0153557792798908No Hit
AACATA1568431.007671818282803No Hit
ACTAGC1562791.0040482781470528No Hit
GTGGTG1549430.9954648568325801No Hit
TCATGT1509920.9700808017326691No Hit
GACACG1502250.9651530441367104No Hit
CCGTCG1480100.9509222969723716No Hit
AGTTAG1457290.9362675185155513No Hit
GAGCAC1457090.9361390241844963No Hit
ACCGCT1452020.9328816928922525No Hit
GCTGTC1450630.9319886572914206No Hit
TGTGTG1420790.9128173030980177No Hit
GCGTAT1419250.9118278967488942No Hit
TCCTCC1383480.8888466856397113No Hit
CGTTGC1383310.8887374654583144No Hit
TACGAA1371440.8811113269102016No Hit
CCGCTC1363750.8761707198811376No Hit
CGACAA1351630.8683839634192059No Hit
GCCTGG1350630.867741491763931No Hit
TATAAG1350100.8674009817866353No Hit
GCTTCT1346700.8652165781587007No Hit
CATTAA1342360.8624282511748077No Hit
AATGTA1324030.8506517457336188No Hit
AATCGG1280210.822498637799473No Hit
CGCTTG1273990.8185024641036631No Hit
GTTGGC1250540.8034365037874669No Hit
GAACCG1246180.8006353273704683No Hit
GACCGA1220450.7841045316802452No Hit
TCAATG1209750.7772300849688039No Hit
AAGTTG1161100.7459738389396802No Hit
CATGAG1058770.6802297144554003No Hit
CGAAGC1038990.6675216251140628No Hit
GCGGCT998530.6415272219416406No Hit
TTCGTT834170.5359305806806589No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)