FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001836476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30477974
Sequences flagged as poor quality0
Sequence length6
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCT6893132.2616759237343005No Hit
GTAAGA6020171.9752526857592305No Hit
TTACGT5955051.9538864361522195No Hit
GTACGC5807541.9054875497957968No Hit
GAGATA5681651.8641823108058297No Hit
GAGAAG5431381.7820672725818325No Hit
TGATAA5038591.6531905959365933No Hit
ACGCTA4896911.606704566386204No Hit
ATTGCT4746641.5574001080255533No Hit
ATTGAA4729751.5518584010866339No Hit
GGAGGC4665951.5309252511338187No Hit
ATTCGA4586431.5048342780264856No Hit
AATTGC4548411.4923596955624412No Hit
CGTGAA4403581.4448401327463565No Hit
ATCCAC4365891.4324738251958613No Hit
TTGAAT4345031.425629538236367No Hit
GGACTA4308231.4135552448466555No Hit
GTCTGC4048771.3284249143332165No Hit
CTGGAG4036851.3245138932135057No Hit
TATTCT3984151.307222717625522No Hit
CGTCAG3946181.2947645404514092No Hit
TTCCAT3909941.2828739863089325No Hit
TGTGAT3909311.2826672796557934No Hit
CTGAGG3871381.270222226713626No Hit
CTGTAT3846611.262095046081475No Hit
AGTCAA3830451.2567928563755584No Hit
CACATT3829741.2565599012585285No Hit
ATTCAT3796071.2455125790185397No Hit
CTCGTC3790601.2437178403000146No Hit
CTAGTT3757371.2328148846114246No Hit
CCACTT3674251.205542730629011No Hit
GGATTC3665991.2028325767322985No Hit
TTCTGT3637771.193573431094862No Hit
ATACCT3631171.1914079328238811No Hit
AAGGCG3608051.1838221267594755No Hit
ACTAAT3582111.1753110623429235No Hit
CAGTCC3579721.1745268894841894No Hit
CGAATT3470141.1385730560699343No Hit
TCGGAC3466281.1373065676872092No Hit
GACCAT3391901.112902058384852No Hit
ACCAGG3343481.0970151756150195No Hit
GATTCA3318441.0887994064172375No Hit
AGTGCA3307531.0852197721541466No Hit
TCTCTG3287861.0787659310950262No Hit
GACTAA3272611.0737623176658657No Hit
ATCAGC3234791.0613533563615483No Hit
GCCATA3209431.0530325933082034No Hit
TGCGGA3160891.037106337842535No Hit
TTCTAC3129591.0268366263453077No Hit
AACATA3053571.0018940235331917No Hit
ACTAGC3036960.9964441862178897No Hit
GACTTG3027080.993202500927391No Hit
AGGACT3020910.9911780881498226No Hit
ACCGCT2902740.9524058259253059No Hit
TCATGT2874730.9432155825055825No Hit
GTGGTG2861480.9388681806736892No Hit
GACACG2830910.928837986409464No Hit
GAGCAC2822890.9262065779044237No Hit
GCTGTC2801720.9192605781473533No Hit
CCGTCG2797420.9178497232132293No Hit
TCCTCC2780150.9121833360708295No Hit
GCGTAT2746800.9012410076864033No Hit
CCGCTC2709930.8891437468907875No Hit
CGTTGC2693510.8837562496772259No Hit
CGACAA2692460.8834117385886608No Hit
TACGAA2689940.8825849119761044No Hit
TGTGTG2669880.8760031096555172No Hit
AGTTAG2668850.8756651606829248No Hit
CATTAA2648710.8690571098984465No Hit
GCCTGG2579920.8464867120104506No Hit
AATGTA2561950.8405906508090071No Hit
GCTTCT2556950.8389501218158398No Hit
TATAAG2538950.8330442174404376No Hit
GTTGGC2463900.8084198772529959No Hit
AATCGG2447600.8030717527352704No Hit
CGCTTG2447300.8029733209956804No Hit
GACCGA2416090.7927331390203299No Hit
GAACCG2385310.7826340425383919No Hit
TCAATG2262100.7422081270887625No Hit
AAGTTG2176110.7139943094642708No Hit
GCGGCT2078140.6818497843721503No Hit
CGAAGC2029960.6660416469939898No Hit
CATGAG1992370.6537081500233579No Hit
TTCGTT1635320.536557974621279No Hit
NNNNNN991090.32518237596764143No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)