FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001836480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18992850
Sequences flagged as poor quality0
Sequence length6
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCT4261592.243786477542865No Hit
GTAAGA3870232.0377299878638544No Hit
TTACGT3765391.982530267969262No Hit
GAGATA3628131.9102609666269148No Hit
GTACGC3590661.8905324898580256No Hit
GAGAAG3580501.885183108380259No Hit
TGATAA3233031.70223531486849No Hit
ATTGAA3029671.5951634430851611No Hit
ACGCTA2998961.5789942004491162No Hit
ATTGCT2988101.5732762592238658No Hit
GGAGGC2883061.5179712365442786No Hit
ATTCGA2880311.5165233232505917No Hit
AATTGC2799591.4740231192264457No Hit
CGTGAA2784571.4661148800732908No Hit
TTGAAT2779221.4632980305746637No Hit
GGACTA2726721.4356560495133694No Hit
ATCCAC2649511.3950039093658928No Hit
CTGGAG2607241.372748165757114No Hit
GTCTGC2552551.3439531192001202No Hit
TGTGAT2537081.3358079487807253No Hit
CGTCAG2530111.3321381467236355No Hit
CTGTAT2500611.316605985936813No Hit
TATTCT2488781.3103773262043348No Hit
CTGAGG2480291.3059072229812798No Hit
ATTCAT2404881.266202807898762No Hit
TTCCAT2399861.2635597079953773No Hit
CACATT2382931.254645827245516No Hit
AGTCAA2381861.2540824573457907No Hit
CTAGTT2344481.2344013668301492No Hit
GGATTC2330591.2270880884122184No Hit
AAGGCG2317821.2203645055902617No Hit
CTCGTC2307511.2149361470237483No Hit
CCACTT2289481.2054431009564124No Hit
TTCTGT2280661.2007992481381151No Hit
ACTAAT2246771.1829556912206436No Hit
ATACCT2237481.178064376857607No Hit
CAGTCC2213861.1656281179496495No Hit
CGAATT2178171.1468368359672192No Hit
TCGGAC2113481.1127766501604552No Hit
ACCAGG2102161.1068165125297151No Hit
GATTCA2090341.1005931179364867No Hit
TCTCTG2086361.098497592515078No Hit
GACCAT2082161.0962862340301744No Hit
AGTGCA2074141.0920635923518587No Hit
GACTAA2027001.0672437259284415No Hit
GCCATA2008891.0577085587471076No Hit
GACTTG1974741.0397281082091419No Hit
TTCTAC1970381.037432507496242No Hit
ATCAGC1968481.0364321310387856No Hit
TGCGGA1941861.022416330355897No Hit
AGGACT1934161.018362173133574No Hit
AACATA1895110.9978018043632209No Hit
GTGGTG1888990.9945795391423614No Hit
ACTAGC1872680.9859920970259861No Hit
GACACG1827740.9623305612375184No Hit
TCATGT1820910.9587344711299252No Hit
CCGTCG1796340.9457980239932396No Hit
GAGCAC1778060.9361733494446594No Hit
GCTGTC1766450.9300605227756762No Hit
AGTTAG1764360.9289601086724741No Hit
ACCGCT1762950.9282177240382565No Hit
TGTGTG1747120.9198830086058701No Hit
GCGTAT1745040.9187878596419178No Hit
TCCTCC1682910.886075549483095No Hit
CGTTGC1668620.8785516654951732No Hit
TACGAA1664040.8761402317187784No Hit
CCGCTC1660110.8740710319936186No Hit
CGACAA1655410.8715964165462267No Hit
GCCTGG1654850.8713015687482395No Hit
TATAAG1648050.8677212740583957No Hit
CATTAA1640870.8639409040770606No Hit
GCTTCT1629070.8577280397623316No Hit
AATGTA1624020.8550691444411976No Hit
CGCTTG1562010.8224200159533719No Hit
AATCGG1557870.820240248303967No Hit
GTTGGC1541380.8115580336810958No Hit
GAACCG1524650.80274945571623No Hit
GACCGA1505380.7926035323819226No Hit
TCAATG1457300.767288742869027No Hit
AAGTTG1415130.7450856506527457No Hit
CATGAG1285320.6767388780514773No Hit
CGAAGC1254170.6603379692884427No Hit
GCGGCT1238160.6519084813495605No Hit
TTCGTT1016720.5353172378026467No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)