FastQCFastQC Report
Thu 5 Jan 2023
EGAF00001836484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences367217045
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTACC65567391.7855214209895949No Hit
AACATA39393261.0727514023756712No Hit
CTGTTC38043181.0359862244411884No Hit
TCTTCA35802110.9749577392302147No Hit
GCTGTC35212120.9588912192243146No Hit
CTATTA32964490.8976840930681745No Hit
CCTCGG32347130.8808722372895299No Hit
TAAGTC30818600.8392475354731967No Hit
AACCTT30694650.8358721474924999No Hit
CCACTT29892630.8140316580348278No Hit
TGGCAT29884030.813797464112811No Hit
AAGCAT29859350.8131253820203254No Hit
TACGGC29729230.8095819735165072No Hit
GTCTCA29567920.8051892035676068No Hit
CTTAGC28374570.7726920737026246No Hit
ACCGCT27951840.761180353161439No Hit
ATCCGG27887370.7594247157018542No Hit
GATCCT27880920.7592490702603415No Hit
GCGCAG27744420.7555319225446085No Hit
GGCCGT27706380.7544960229174548No Hit
AACTAG27424340.7468155515493569No Hit
CTATGC26485320.7212442984502531No Hit
AGCCTA26007220.7082247502971982No Hit
CAACGG25625980.697842879270487No Hit
TCAAGC25624570.6978044823600168No Hit
TTGAAT25470440.6936072371041492No Hit
TACTCG25449070.6930252924397886No Hit
CATACG25359640.6905899479693269No Hit
GAGTCG25024090.681452300232959No Hit
ACACGA24760880.6742846046266725No Hit
TCATGT24758020.6742067215316762No Hit
CCTTAT23924520.6515089733920166No Hit
AAGCGC23901990.6508954397800353No Hit
TAATGA23901570.6508840024024484No Hit
CCTGAC23849810.6494744817741235No Hit
CGTACT23794560.647969921984422No Hit
ACCAGG23721100.6459694701807756No Hit
ACGAAC23461790.6389079787949387No Hit
AGGACT23457280.6387851631451367No Hit
TGTGAT23445220.638456747017285No Hit
CGAGCC23253760.6332429367487558No Hit
GACACG23125290.6297444607997431No Hit
CGTTGC23080700.628530192545937No Hit
CATGAG23036390.627323549210522No Hit
TATGGT22975280.6256594107716323No Hit
AGTTCC22861730.6225672340454675No Hit
GTTACA22796680.6207958021120724No Hit
GTCGAG22757350.6197247733966161No Hit
GAAGAT22460210.6116331010724189No Hit
GTAAGA22421800.6105871256602481No Hit
ACAGCC22334980.6082228563219335No Hit
GTGGTG22017840.59958654696979No Hit
TCCTCC21751510.592333887987144No Hit
ATGTGA21701070.5909603134026635No Hit
CCGGAA21661330.5898781196281343No Hit
CGAGAG21576920.5875794790516873No Hit
TGCGAC21355280.5815438115079871No Hit
TATTCT21191180.5770750646936882No Hit
ATTGCT21177670.5767071623813105No Hit
GGACTA21156490.5761303917687154No Hit
AGGTGT21061270.5735373748786634No Hit
TGCATA20905420.5692932908383923No Hit
CTCCGC20521280.5588324474426289No Hit
CAGGAC20498050.5581998515346693No Hit
CCGCTC20156660.5489031697861411No Hit
TGTGTG20105250.5475031803058052No Hit
TATTGG19640390.5348441818652508No Hit
ATGGCC19532790.5319140346549001No Hit
ACGTAA19429540.5291023459981276No Hit
AGAGGT19325580.5262713227268631No Hit
GACCGA19269510.5247444328190157No Hit
GCGTAT19248690.5241774656729237No Hit
TTAGTA18873480.5139598027101383No Hit
TCGTGG18829310.5127569718339191No Hit
GAGCCA18641010.5076292142158052No Hit
TCAATG18616200.5069535919826379No Hit
GACTAA18557840.5053643411350908No Hit
AATTGC18355900.4998651410639177No Hit
GCTCAA18330560.4991750859495098No Hit
TAGAGC18288930.4980414239758397No Hit
TTCTAC18253430.4970746932512351No Hit
GTTGGC18251420.49701995722992653No Hit
CGAATT18193590.49544513926362No Hit
GGTAAT18164170.49464397819551104No Hit
AATCGG18144530.49410914463406785No Hit
GCGGCT17951750.48885938832169407No Hit
GGATCG17917430.48792479118173837No Hit
TTACGT17881880.4869566988645639No Hit
AACTCT17810260.4850063536674884No Hit
TCCACG17775140.48404997104641484No Hit
GGCGTT17606220.4794499667083809No Hit
GAGAAG17450440.47520778889770765No Hit
CCTGCT17440370.47493356415413673No Hit
CGTCTC17221940.4689853108534219No Hit
AGTAGG17156490.46720298617946776No Hit
CTTCAC17125800.4663672406600843No Hit
TACAGT17124550.4663332008458376No Hit
TGCGGA16952110.46163734039088516No Hit
CCAGCG16736730.45577214423693213No Hit
CTGGAG16416200.4470435189085517No Hit
TTCACA16340430.44498016152817743No Hit
GGATTC16297610.4438140936513445No Hit
CACCTA16271050.44309081567823194No Hit
CTGAGG16260130.44279344386097325No Hit
GTACTT16164860.4401990653783514No Hit
CAGTAG16073770.43771851603457024No Hit
GCATAA16026610.436434261922673No Hit
TCCAGA16006480.4358860847540451No Hit
GTACGC15946340.4342483612110108No Hit
ACTAGC15886680.43262370895664715No Hit
GATTCA15838960.4313242050079674No Hit
AGGCTT15679740.4269883496284875No Hit
CAAGGA15638750.4258721160397116No Hit
GCTTCT15536820.4230963734267836No Hit
GAGTGA15490730.42184125739588146No Hit
TTCGTT15155540.4127134131260165No Hit
GAGATA14913580.40612439436192294No Hit
CAGCCT14802960.40311200696035226No Hit
GCACAT14762270.4020039429269957No Hit
ACCTGC14735610.4012779417687433No Hit
ACGCTA14699140.4002847961482834No Hit
AGAACG14644200.398788678232515No Hit
CGTCAG14588030.397259065139528No Hit
CAAGCT14499790.3948561265722292No Hit
AGGTCA14469330.3940266443786671No Hit
CGCTTG14353910.39088354409038933No Hit
TTAGCG14077240.3833493077642951No Hit
TGACAC14048100.3825557716145774No Hit
GGAGGC14039620.38232484551472823No Hit
CATTAA13944230.37972719920993864No Hit
AATGTA13879700.3779699278392701No Hit
TCTCGC13819010.37631722677796725No Hit
AAGTTG13759160.37468740047183813No Hit
TCTCTG13489720.3673500504313464No Hit
AGTCAA13479680.36707664264331735No Hit
ATTCGA13397160.3648294702660112No Hit
CACATT13383350.36445339839821433No Hit
ATGCCG13366590.36399699256879536No Hit
GAATAC13305720.362339389774241No Hit
GGTGGT13266230.36126400396256114No Hit
GAGCAC13228680.36024144794259205No Hit
CTACCG13161060.3584000301511059No Hit
GGCAGG12974410.3533172050877976No Hit
GGCCAG12560700.34205111584621567No Hit
ATCCAC12417600.33815423791126037No Hit
AGACGG12213830.3326052035520301No Hit
CGTGAA12201360.3322656223651056No Hit
CATAAC12048390.3280999660568588No Hit
CCGACT11778000.32073674575753963No Hit
AGATGC11769540.3205063642947184No Hit
AACAAT11498980.31313851458066166No Hit
CTCGTC11370120.3096294182096041No Hit
CCATGA11292910.30752684696321764No Hit
GCCTGG11168180.3041302181384309No Hit
AAGAGG11155290.3037791995739196No Hit
AAGGCG10838940.29516440338437994No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)