FastQCFastQC Report
Wed 27 Sep 2023
EGAF00001836488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376539367
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAGG40027421.0630341342237397No Hit
CATACG37271570.9898452397408953No Hit
CTCCGC36289590.9637661604716088No Hit
AAGCGC36219310.9618996889639961No Hit
TACTCG36066020.9578286670886128No Hit
GCGTAT33139310.880102132853482No Hit
CTGTTC32663390.8674628169755222No Hit
CCGCTC32368650.8596352157781154No Hit
GTCGAG30936660.8216049292928247No Hit
TAGAGC29904160.794184157642141No Hit
TGCGGA29897750.7940139231178981No Hit
AATCGG28820210.7653969949973385No Hit
GCTGTC28477720.7563012661037378No Hit
GAAGAT27881040.7404548486426918No Hit
GGCCGT27189480.7220886415310726No Hit
AACCTT26175560.6951613109818608No Hit
GACACG25795620.6850709981673709No Hit
TCGTGG25712580.6828656510701575No Hit
CGTACT25552210.6786066010463123No Hit
GAGCAC25501580.6772619873236255No Hit
ACGAAC24342890.6464899060607386No Hit
GTTGGC24178160.6421150646912306No Hit
GGTAAT24174530.6420186604286717No Hit
ACACGA23929400.6355085841529021No Hit
ATCCGG23823130.6326863028906086No Hit
TCTCGC23779370.6315241402102851No Hit
GACTAA23739210.6304575850630779No Hit
TACGGC23342760.6199288054786579No Hit
CTATTA23226350.6168372296647537No Hit
GGTACC22876450.6075447085988223No Hit
AACATA22726720.6035682319506316No Hit
CTTAGC22593800.6000381893667974No Hit
TGATAA22520010.5980785005143964No Hit
GAGAAG22465350.5966268594699157No Hit
ACCGCT22310770.592521578228499No Hit
TCAAGC22310670.5925189224636902No Hit
AGGTGT22262630.5912430930495509No Hit
TAATGA21986170.5839009656591896No Hit
TTACGT21913010.581958008125084No Hit
CTGTAT21752620.5776984269482771No Hit
TATTCT21713510.576659757331562No Hit
TGTGAT21663360.5753278912799574No Hit
TCCAGA21325840.5663641538973533No Hit
ACCTGC21290560.5654272000728147No Hit
TGCATA21170690.5622437347965266No Hit
TTCTGT21029760.5585009654515088No Hit
TGGCAT20675430.5490907940045483No Hit
GAACCG20560650.5460425071570272No Hit
GTAAGA20236680.5374386259060132No Hit
CCTCGG20176340.5358361374203936No Hit
CATTAA20054230.5325931830123887No Hit
TAGCTT19909140.5287399338513256No Hit
AACTAG19878840.5279352371142644No Hit
CGAATT19849480.5271555045664057No Hit
AGGACT19675410.5225326147637572No Hit
TAAGTC19544570.5190578120879457No Hit
CAGCCT19354890.5140203573986462No Hit
CATGAG19252140.5112915590576217No Hit
ACTAGC19213120.5102552796292346No Hit
AAGCAT19005130.5047315544034471No Hit
TCCTCC18964000.5036392383375946No Hit
ATGGCC18947220.5031936010026808No Hit
CGATGT18771160.49851786148033755No Hit
CGTTGC18470760.4905399439947537No Hit
AGTCAA18353030.48741331208537353No Hit
AGGCTT18324070.48664420259675No Hit
CCTGCT18126080.48138605385184063No Hit
GCTTCT17997380.47796808454293704No Hit
CAAGGA17908610.4756105621221804No Hit
GGATTC17794400.4725774131340695No Hit
GCGCAG17791760.4725073009431176No Hit
GATCCT17664870.4691374009772529No Hit
GAGATA17423920.4627383356704905No Hit
AAGAGG17395040.46197135079371393No Hit
GGACTA17301460.45948608608565494No Hit
CAAGCT17269980.45865005132385006No Hit
TACGAA17214720.45718247569051657No Hit
GCTCAA17213290.457144498253751No Hit
TCTCTG17212850.4571328128885923No Hit
TCAATG17133140.4550159027595114No Hit
GCGGCT17062330.4531353556984123No Hit
ATCCAC17005200.45161811726315454No Hit
ATTGCT16971600.4507257802874035No Hit
GGATCG16959750.45041107215756276No Hit
TTAGTA16812500.44650045847662984No Hit
GTGGTG16653480.4422772612777032No Hit
ACTAAT16455780.4370268142507394No Hit
GCACAT16412410.4358750090531703No Hit
CAGTCC16160840.42919390152371506No Hit
GAGCCA16118240.42806254571517355No Hit
CACCTA16051500.42629008828179177No Hit
CGTGAA16027860.4256622654809955No Hit
CTAGTT16006100.42508437105860436No Hit
CACATT15904830.4223948780367499No Hit
TGTGTG15846040.42083355390566635No Hit
TCCACG15793910.41944910371084787No Hit
TCTTCA15741880.4180673092808381No Hit
CATAAC15697480.4168881497057385No Hit
CGAGCC15690610.4167056986633751No Hit
CAACGG15622940.4149085426172717No Hit
TGACCA15596000.4141930795777855No Hit
AGATGC15461310.4106160299568358No Hit
CGTCTC15402200.40904620737836417No Hit
CCGTCG15197890.4036202142975398No Hit
TTGAAT15153420.4024391956870741No Hit
CGAGAG15145410.40222646892589053No Hit
TTCTAC15141440.40212103506298186No Hit
TACAGT15068220.40017648406999107No Hit
CTATGC15000760.39838490512998603No Hit
CTGAGG14982360.39789624440516996No Hit
GGCGTT14884360.39529359489256277No Hit
ACTTGA14853840.3944830554729222No Hit
GCCATA14838630.39407911364550635No Hit
AGAGGT14822860.3936602995351612No Hit
GTCTGC14819170.39356230181371715No Hit
CCTTAT14719360.39091158295807094No Hit
TTCGTT14542130.3862047709874649No Hit
CCGACT14506700.3852638335157131No Hit
GACCAT14438760.383459506904626No Hit
TATTGG14433530.38332061040512666No Hit
GTACTT14229800.3779100207601932No Hit
TTCCAT14227390.3778460168283015No Hit
AGTGCA14115630.37487793407800574No Hit
CCACTT14066440.3735715633685654No Hit
GTCTCA13683180.3633930791624239No Hit
GACCGA13675780.363196552566574No Hit
AATGTA13546260.3597568059862383No Hit
ATACCT13543880.3596935987837893No Hit
CTTCAC13529840.3593207294046362No Hit
TCGGAC13522980.35913854393875366No Hit
TCATGT13393520.3557003908173033No Hit
GAATAC13261280.35218840743416874No Hit
CGACAA13249340.35187130911600006No Hit
TTAGGC13225000.3512248959615423No Hit
GCCAAT13213240.35091257802002945No Hit
CAGGAC13207190.3507519042490981No Hit
ACAGCC12869620.3417868389840895No Hit
AATTGC12807340.34013282866117955No Hit
ATGCCG12764040.33898288249897657No Hit
CCGGAA12731000.33810541780615466No Hit
GATCAG12724610.3379357144348734No Hit
ACAGTG12673100.33656772998186935No Hit
ATCAGC12657030.3361409485770979No Hit
CCATGA12644030.3357956991519561No Hit
AAGTTG12552570.3333667366578433No Hit
TATAAG12530220.3327731732230803No Hit
GTTACA12407130.3295041923199494No Hit
GTACGC12264140.32570671421987063No Hit
AGTTAG12104760.3214739562676324No Hit
AACTCT12089810.3210769194287194No Hit
AGACGG12002390.3187552498328814No Hit
AGCCTA11986810.318341481675673No Hit
TTAGCG11885990.315663939595458No Hit
CGCTTG11843800.31454347242263253No Hit
ATTCGA11789100.3130907690722282No Hit
CAGTAG11645970.30928957290141723No Hit
GATTCA11599090.3080445503590598No Hit
AAGGCG11482620.3049513810862703No Hit
CTGGAG11196710.297358283921479No Hit
GGCCAG11194170.297290827495336No Hit
CAGATC11137420.29578368096635166No Hit
GGCTAC11033380.2930206232592939No Hit
TATGGT11018410.2926230552674191No Hit
GAGTCG10969520.29132465185240514No Hit
AGTAGG10953610.29090211967132773No Hit
GCATAA10884560.28906831407086314No Hit
GGTGGT10684090.28374430235869597No Hit
ATGTGA10573760.2808141970451658No Hit
ATTGAA10431740.2770424798637323No Hit
ACGCTA10418540.27669191890897293No Hit
GGCAGG10398710.2761652807473913No Hit
ATTCAT10162690.2698971446457018No Hit
TGCGAC9716610.2580503089866829No Hit
AGAACG9661170.25657795297669367No Hit
CTCGTC9425530.2503199087812776No Hit
GAGTGA9360270.24858675666706584No Hit
TGACAC9181430.24383718688303843No Hit
ACGTAA9068560.24083962514336513No Hit
CCTGAC9037280.24000890191117782No Hit
AGTTCC8947790.23763225798379803No Hit
GCCTGG8819660.23422942653430445No Hit
AACAAT8439100.2241226479780001No Hit
CGTCAG8323560.22105417731793234No Hit
CGAAGC8264450.21948435473946076No Hit
GACTTG7844350.20832748677776367No Hit
CCAGCG7499000.19915580301063182No Hit
GGAGGC7481540.1986921064750183No Hit
TTCACA7219850.19174223554691427No Hit
CTACCG6696230.1778361198551651No Hit
AGGTCA5600730.1487422163749481No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)