FastQCFastQC Report
Thu 14 Sep 2023
EGAF00001836494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413247353
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTC42368601.025260045646318No Hit
TTACGT42222211.0217176152124077No Hit
CGAATT41637051.007557572909608No Hit
GCTTCT41029490.9928554823677237No Hit
CCTTAT40122420.9709056745004728No Hit
GCACAT37012790.8956570376386659No Hit
AACATA35076760.8488078567317526No Hit
CAGTAG33716190.8158839918812499No Hit
TAGAGC33640350.8140487714146349No Hit
TTAGTA33443180.809277536981586No Hit
GAGTCG32068400.776009810279414No Hit
CCACTT31853750.770815584631222No Hit
GTACTT31492050.7620629574849327No Hit
CTTAGC31361860.7589125440810749No Hit
GTAAGA31319410.7578853142708455No Hit
CTGAGG30527240.738715923487113No Hit
GGATCG30124060.7289595391552333No Hit
GGTAAT30009000.7261752502985784No Hit
TAGCTT29878640.7230207231357632No Hit
GGCTAC29721870.7192271114196345No Hit
CTATTA29445350.7125357194967925No Hit
GAATAC28852620.6981924939274807No Hit
TGTGAT28762640.6960151055099438No Hit
ACTTGA28229410.6831116955757004No Hit
GAGAAG28214260.6827450870568552No Hit
CACATT28093380.6798199624523669No Hit
ATTCAT28089010.6797142146485812No Hit
GGCCGT27791090.6725049730687567No Hit
AAGCGC27781490.6722726666805776No Hit
ATCCGG27719550.6707738065051805No Hit
ACGAAC27635930.6687503210698121No Hit
CCGTCG27611160.6681509221911459No Hit
CAGGAC27608170.6680785684306609No Hit
CAGATC27422330.6635815039328274No Hit
CGAGCC26988380.6530805292296693No Hit
CCTCGG26765570.6476888431515252No Hit
CCGGAA26291160.6362087938165208No Hit
AGTTAG25942900.6277813956136823No Hit
CTGGAG25858660.6257429070574108No Hit
CTCCGC25615240.6198524882021447No Hit
TCATGT25595410.6193726303190622No Hit
CGTTGC25462160.6161481692539722No Hit
CAACGG25282730.6118062176674124No Hit
TGCATA24767380.5993354783811525No Hit
TTCTAC24534890.5937095500282611No Hit
CGTGAA24404310.5905496991773834No Hit
CGTACT23931450.579107157644637No Hit
GTGGTG23772520.575261276991168No Hit
TCAATG23467560.5678816773933456No Hit
CATAAC22928620.5548400935552998No Hit
AAGAGG22906550.5543060308483089No Hit
TTGAAT22901740.5541896356683984No Hit
CTACCG22876970.5535902367897321No Hit
CAGCCT22846590.5528550838654737No Hit
AACCTT22725750.5499309272042694No Hit
CGATGT22701940.549354758964421No Hit
ATTGAA22523820.5450445075204148No Hit
TCGTGG22477930.5439340345877546No Hit
ACTAAT22443120.5430916819447843No Hit
CTGTAT22291380.5394197890966285No Hit
AACTCT21679820.5246209042263363No Hit
GCCAAT21545390.521367888834366No Hit
CAGTCC21394840.5177247922989116No Hit
TGGCAT21319520.5159021550949898No Hit
TACAGT21064070.5097206272970367No Hit
GCGCAG20971190.507473062991404No Hit
TGATAA20797840.5032782387840243No Hit
TTAGGC20722920.5014652810129434No Hit
AGGACT20332190.49201016902823336No Hit
GATCAG20210080.48905528016775945No Hit
GATCCT20191250.48859962086677905No Hit
GAACCG20076200.48581557399594527No Hit
GTCTGC19809230.47935527853217735No Hit
CTGTTC19807730.47931898065902434No Hit
AAGGCG18614370.4504413607217951No Hit
GACACG18570700.44938460864140123No Hit
TACGGC18506740.4478368673301581No Hit
CCATGA18277320.4422852286243198No Hit
ACTAGC18117110.4384083737857602No Hit
CGAGAG18057310.4369612985760613No Hit
GTCTCA17984700.43520423952963583No Hit
AACTAG17869530.43241728882894986No Hit
GACTAA17795220.4306190921929511No Hit
CCAGCG17772110.4300598629605741No Hit
AGTTCC17693410.4281554345491477No Hit
ACAGCC17489410.4232189238003419No Hit
CCTGCT17488910.42320682450929087No Hit
TCTTCA17393090.4208881163722784No Hit
ATGCCG17223760.4167905704649486No Hit
TCGGAC17188420.41593539257346435No Hit
CATACG17179050.41570865185916867No Hit
GAGCAC17082410.4133701008848325No Hit
CGAAGC17081540.4133490481184038No Hit
CAAGCT17031800.4121454106446509No Hit
TGCGGA17007560.41155883701449864No Hit
CCGCTC16974260.4107530242305025No Hit
GCATAA16686190.40378213868438256No Hit
TTCCAT16632650.40248654659864214No Hit
GCTCAA16604730.40181092218635456No Hit
CAAGGA16562300.40078417634776714No Hit
TATTGG16561920.40077498088656843No Hit
GACTTG16491040.39905978538717946No Hit
ATCAGC16286040.3940990760562718No Hit
AGTGCA16284080.3940516468353519No Hit
GTTGGC16229480.3927304042525833No Hit
AGAACG15909480.384986857979947No Hit
CATGAG15871400.3840653759735032No Hit
TGCGAC15721150.3804295390126794No Hit
TCCAGA15710850.38018029361702893No Hit
GTCGAG15653130.3787835514581021No Hit
GGCCAG15628580.3781894762674983No Hit
CGTCTC15590390.37726533241702337No Hit
AATCGG15214310.36816472966010744No Hit
GCCATA15048790.36415938035058626No Hit
TATAAG14990390.3627461831558302No Hit
TACGAA14833990.3589615249150791No Hit
ACCAGG14736490.3566021631601352No Hit
CGACAA14559770.3523257897310718No Hit
GGCGTT14529310.35158870092024525No Hit
AAGCAT14456450.34982559222829435No Hit
GTTACA14368620.34770023076227663No Hit
ACCGCT14306530.34619774079956417No Hit
GACCGA14299160.3460193972494725No Hit
AATTGC13884870.33599416667043963No Hit
CTCGTC13853480.3352345731782582No Hit
TTCGTT13640920.3300909225666595No Hit
ACGTAA13493980.32653518291259326No Hit
ACACGA13163760.31854432713087455No Hit
TAAGTC13144630.31808140825526354No Hit
AGGCTT13132600.3177902993125766No Hit
CGTCAG12933120.3129631661548719No Hit
CCGACT12880430.3116881428639181No Hit
ATACCT12823630.3103136634005252No Hit
TCTCTG12754650.30864444520712997No Hit
CCTGAC12700460.3073331240430232No Hit
GACCAT12675420.3067271915471894No Hit
CTTCAC12662550.3064157557955368No Hit
GCGTAT12498080.3024358149972227No Hit
CTATGC12494720.3023545077613601No Hit
AGCCTA12291870.2974458253819717No Hit
TGACCA12285560.2972931323289081No Hit
ACAGTG12118140.29324180571339314No Hit
GGACTA12024640.29097923828685723No Hit
TCAAGC11908320.2881644592167539No Hit
TGTGTG11907150.2881361468756946No Hit
GTACGC11837640.2864541034337853No Hit
TTCTGT11627790.281376030979683No Hit
TCTCGC11511870.2785709313424205No Hit
CTAGTT11445550.2769660813774166No Hit
GGATTC11276850.2728837805768111No Hit
GCGGCT11122910.269158650848031No Hit
CATTAA10928200.26444694492695275No Hit
ATCCAC10830780.262089519058577No Hit
TAATGA10778430.2608227232855379No Hit
CGCTTG10594180.25636413453324647No Hit
AGGTGT10587790.2562095055936148No Hit
AGTCAA10385820.25132211796647613No Hit
AACAAT10360520.2507098938392958No Hit
TTAGCG10253400.2481177417245308No Hit
TATGGT10170500.2461116792682759No Hit
AGTAGG10073450.2437632068752779No Hit
GGTGGT10071280.2437106959521166No Hit
AAGTTG9995900.2418866068332687No Hit
GAGTGA9943890.24062803857814427No Hit
CACCTA9923250.24012857984355923No Hit
GGCAGG9877990.2390333520176232No Hit
AGGTCA9854230.23845839370687996No Hit
TGACAC9644010.23337136777739992No Hit
AGACGG9382580.227045132458477No Hit
ATTCGA9028230.21847036489063731No Hit
TATTCT8932040.216142703278247No Hit
GGAGGC8924870.21596919944457577No Hit
GATTCA8821670.21347190577165054No Hit
TTCACA8702280.21058283705449407No Hit
ACCTGC8692770.21035270853870416No Hit
AGAGGT8684330.2101484725057634No Hit
ATTGCT8528000.2063655081657595No Hit
TACTCG8390420.2030362672401679No Hit
TCCTCC8335950.20171817047307258No Hit
AATGTA8187850.19813436046376806No Hit
ATGTGA8084140.19562472551397078No Hit
GCCTGG7496720.1814099944156206No Hit
GAGATA7156900.17318683224572282No Hit
ATGGCC6521390.15780839133408797No Hit
ACGCTA6280850.1519876643952756No Hit
AGATGC5385760.13032775554160658No Hit
TCCACG5176130.12525500677556667No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)