FastQCFastQC Report
Sat 10 Sep 2022
EGAF00001837349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001837349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1497879
Sequences flagged as poor quality0
Sequence length126
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGTCCGCATCTCGTA35700.2383370085300615Illumina Paired End PCR Primer 2 (97% over 39bp)
GCACCTCTTCCAGACCATCAAGGATCTACACTCTTTCCCTACACGACGCT21300.14220107231625517Illumina Single End PCR Primer 1 (96% over 29bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)