FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001839350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001839350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14018685
Sequences flagged as poor quality0
Sequence length51
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGGTCCGATGGTAGTGGGTTATCAGAACAGATCGGAAGAGCACACGTC6799614.8503907463503175No Hit
ACGGCCCTGGCGGAGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACA6232854.4461017563344924Illumina Multiplexing PCR Primer 2.01 (100% over 34bp)
GGCTGGTCCGATGGTAGTGGGTTATCAGAACTAGATCGGAAGAGCACACGT3088322.203002635411239No Hit
GGGGCTGTAGCTCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCA1589851.1340935330239605TruSeq Adapter, Index 1 (100% over 37bp)
ACGGCCCTGGCGGAAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATC1498551.0689661690807661TruSeq Adapter, Index 1 (100% over 36bp)
GCGGGCGTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATC1483641.0583303640819377TruSeq Adapter, Index 1 (100% over 42bp)
AGCCGGCGGGAGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCA1323870.9443610438496906TruSeq Adapter, Index 1 (100% over 37bp)
ACGGCCCTGGCGGAGTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACA983670.701684929791917Illumina Multiplexing PCR Primer 2.01 (100% over 34bp)
GGCGATCGTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGAT965880.6889947238275203TruSeq Adapter, Index 1 (100% over 41bp)
AGGGCTGGGTCGGTCGGGCTGGGGCGAGATCGGAAGAGCACACGTCTGAAC898070.6406235677597435Illumina Multiplexing PCR Primer 2.01 (100% over 25bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC887370.6329908975057219TruSeq Adapter, Index 1 (100% over 50bp)
GCTGTCGGTTGCTGTCGGTTAGATCGGAAGAGCACACGTCTGAACTCCAGT775310.5530547266023882Illumina Multiplexing PCR Primer 2.01 (100% over 31bp)
GAGGGGGACGGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCAC749030.5343083177915761TruSeq Adapter, Index 1 (100% over 38bp)
GGGAGTCGGGCGGACAGATCGGAAGAGCACACGTCTGAACTCCAGTCACAT728600.5197349109420748TruSeq Adapter, Index 1 (100% over 35bp)
ACGGCCCTGGCGGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCA725700.5176662433031344TruSeq Adapter, Index 1 (100% over 37bp)
GGCTGGTCCGATGGTAGTGGGTTATCAGAACCAGATCGGAAGAGCACACGT566980.40444592342291735No Hit
AGGGGCCCGGGGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCA565510.4033973229300751TruSeq Adapter, Index 1 (100% over 37bp)
AGGGGGACGGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACG485660.3464376294923525TruSeq Adapter, Index 1 (100% over 39bp)
ACGGCCCTGGCGGAGCGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCA479180.3418152273198235Illumina Multiplexing PCR Primer 2.01 (100% over 33bp)
ACGGCCCTGGCGGAGCGAGATCGGAAGAGCACACGTCTGAACTCCAGTCAC432370.3084240782926501Illumina Multiplexing PCR Primer 2.01 (100% over 34bp)
GGCTGGTCCGATGGTAGTGGGTTATCAGAATAGATCGGAAGAGCACACGTC419650.29935047402805615No Hit
GCGGGCGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCT401790.2866103347068573TruSeq Adapter, Index 1 (100% over 43bp)
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCAGATCGGAAGAGCACACGT393140.28043999847346596No Hit
CGAAGAGGGGGACAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCA385000.2746334624110607TruSeq Adapter, Index 1 (100% over 37bp)
ACGGCCCTGGCGGAGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACAT379720.2708670606408518TruSeq Adapter, Index 1 (100% over 35bp)
GGCGATCGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATC371410.26493925785478456TruSeq Adapter, Index 1 (100% over 42bp)
TGAGGGGCAGAGAGCGAGACTAGATCGGAAGAGCACACGTCTGAACTCCAG370000.2639334573820583Illumina Multiplexing PCR Primer 2.01 (100% over 30bp)
CGGGACGTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATC362390.25850498816401113TruSeq Adapter, Index 1 (100% over 42bp)
GGGACGGCGTCGGGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATC341460.2435749144802098TruSeq Adapter, Index 1 (100% over 36bp)
AAGCCGGCGGGAGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATC340970.24322538098259572TruSeq Adapter, Index 1 (100% over 36bp)
TGAGGGGCAGAGAGCGAGACTTTAGATCGGAAGAGCACACGTCTGAACTCC335920.23962304595616493Illumina Multiplexing PCR Primer 2.01 (100% over 28bp)
GAAGAGGGGGACAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCAC331090.23617764433682617TruSeq Adapter, Index 1 (100% over 38bp)
AAAAGCTGGGTTGAGAGGGCGAAGATCGGAAGAGCACACGTCTGAACTCCA307660.2194642364815245Illumina Multiplexing PCR Primer 2.01 (100% over 29bp)
GAGGGGGACGGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACG305140.2176666356366521TruSeq Adapter, Index 1 (100% over 39bp)
AAGAGGGGGACAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACG292170.20841469795490805TruSeq Adapter, Index 1 (100% over 39bp)
CGCGACCTCAGATCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATC271180.19344182425099074TruSeq Adapter, Index 1 (100% over 36bp)
GGGCGGGGCGGACTGTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACA269730.1924074904315205Illumina Multiplexing PCR Primer 2.01 (100% over 34bp)
GAAGCCGGCGGGAGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACAT258050.18407575318227068TruSeq Adapter, Index 1 (100% over 35bp)
GCGGGCGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATC256570.18302001935274242TruSeq Adapter, Index 1 (100% over 42bp)
AGCCGGCGGGAGTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCA255630.1823494857042583TruSeq Adapter, Index 1 (100% over 37bp)
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGCAGATCGGAAGAGCACACGTC254240.18135795190490406No Hit
CGGGGCGTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATC242670.17310468135920024TruSeq Adapter, Index 1 (100% over 42bp)
GGGGCTGTAGCTTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCA242480.1729691479621662TruSeq Adapter, Index 1 (100% over 37bp)
GGGACGGCGTCGGGGGATAGATCGGAAGAGCACACGTCTGAACTCCAGTCA241150.172020414182928Illumina Multiplexing PCR Primer 2.01 (100% over 33bp)
CGCGACCTCAGATCAGACGTAGATCGGAAGAGCACACGTCTGAACTCCAGT239730.17100748037351576Illumina Multiplexing PCR Primer 2.01 (100% over 31bp)
GCGCTGGCGGGGCTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATC223710.15957987500254125TruSeq Adapter, Index 1 (100% over 36bp)
GCGGACGTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATC223280.15927314152504318TruSeq Adapter, Index 1 (100% over 42bp)
AGAGGGGGACGGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCA221590.15806760762510894TruSeq Adapter, Index 1 (100% over 37bp)
AGGGCTGGGTCGGTCGGGCTGGGGCGCGAGATCGGAAGAGCACACGTCTGA211790.15107693767282737Illumina Multiplexing PCR Primer 2.01 (100% over 23bp)
AGGGGCCCGGGGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCAC206460.14727486921918853TruSeq Adapter, Index 1 (100% over 38bp)
GGGACGGCGTCGGGGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACAT195040.13912859872377475TruSeq Adapter, Index 1 (100% over 35bp)
GGCTGGTCCGATGGTAGTGGGTTATCAGAAAGATCGGAAGAGCACACGTCT191150.13635373075292012Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
AGGGCTGGGTCGGTCGGGCTGGGGCAGATCGGAAGAGCACACGTCTGAACT185730.13248746226910726Illumina Multiplexing PCR Primer 2.01 (100% over 26bp)
GGGAGTCGGGCGGAAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATC182820.1304116612934808TruSeq Adapter, Index 1 (100% over 36bp)
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCAGATCGGAAGAGCACACGTC181160.12922752740360455No Hit
ACGGGTGGGGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGA179180.12781512673977624TruSeq Adapter, Index 1 (100% over 40bp)
AGTGGAGCCTGCGGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACAT174410.12441252514055348TruSeq Adapter, Index 1 (100% over 35bp)
AAAAGCTGGGTTGAGAGGGCGAGATCGGAAGAGCACACGTCTGAACTCCAG167870.11974732294790845Illumina Multiplexing PCR Primer 2.01 (100% over 30bp)
AGAGGGGGACAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGA162610.11599518785107162TruSeq Adapter, Index 1 (100% over 40bp)
GGCGATCGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGAT161330.11508212075526342TruSeq Adapter, Index 1 (100% over 41bp)
GGGACGGCGTCGGGGGAAGATCGGAAGAGCACACGTCTGAACTCCAGTCAC155850.11117305225133456Illumina Multiplexing PCR Primer 2.01 (100% over 34bp)
ACGGGTGGGGTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACG154590.11027425182889837TruSeq Adapter, Index 1 (100% over 39bp)
GGCTGGTCCGATGGTAGTGGGTTATCAGAACGAGATCGGAAGAGCACACGT154580.11026711849221235No Hit
AGGGGGACGGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGA146380.10441778240969106TruSeq Adapter, Index 1 (100% over 40bp)

[FAIL]Adapter Content

Adapter graph