FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001841272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences348670727
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGTT96769002.775369209586671No Hit
CCTGAC89698902.5725962363338866No Hit
ATGTGA84228852.4157132640504115No Hit
CAAGCT82505122.3662760768557436No Hit
ATTGCT79125332.2693425020449163No Hit
CTAGTT77588642.2252696883268896No Hit
TGCGAC75871262.1760146213823104No Hit
GATCCT75671542.170286581012578No Hit
TCGGAC75010892.1513389049147222No Hit
GGATCG73189272.099094197833247No Hit
CGATGT72068272.0669435206127873No Hit
AGGTCA71050152.037743478247315No Hit
GTTACA70966682.035349529070159No Hit
CAGATC70434922.020098463843797No Hit
AATCGG70042412.008841137959941No Hit
TGACCA68966141.977973332989322No Hit
AGTAGG68855631.9748038670306844No Hit
CGAGAG68832441.9741387696134296No Hit
TGATAA67600251.9387991237933777No Hit
TTAGGC66513161.9076209973887486No Hit
ACCTGC66109341.8960392966972532No Hit
GTACGC65723021.8849595022067913No Hit
GCCTGG65067631.8661626847727886No Hit
CCAGCG64588261.8524141833105479No Hit
GAGAAG62451391.7911279945218916No Hit
GGCAGG62411391.7899807803481018No Hit
GGAGGC62240261.7850727113090856No Hit
TACTCG62174431.7831846835825709No Hit
CAGGAC62167071.7829735961745936No Hit
CGTCAG61079121.7517708046652278No Hit
TAAGTC60755081.7424772226433565No Hit
GGATTC58659681.6823804081493772No Hit
CATTAA57434481.647241238006195No Hit
AGAGGT55771821.5995555600513605No Hit
GTAAGA50207891.439980076102001No Hit
TATAAG47704791.3681902811416686No Hit
AGTTCC39462521.1317990569366037No Hit
GACCGA38064351.091699045902411No Hit
GGGTCG13306870.38164574681946273No Hit
CCTGGC12518030.3590215360981537No Hit
GGGTTC12219230.3504518462199438No Hit
GTTGCT11763770.33738909203008605No Hit
TCGGGC11524020.3305129770759333No Hit
TGCGGC10687560.3065230078807275No Hit
GGTCCT10559290.30284417882892706No Hit
CGGTGT9163580.2628147214664224No Hit
ATGTGG9002010.25818083661494184No Hit
GGTAGG8943360.25649873383262256No Hit
CGTCGG8792180.25216283786278393No Hit
CTGGTT8326840.23881672177200008No Hit
GGCGGG8032190.23036605536432084No Hit
CGAGGG7932600.22750977887512763No Hit
GGGGGC7872330.22578121391876985No Hit
GTGTGA7641380.21915748608285088No Hit
TGCTCG7322780.210019925188615No Hit
GGTTTC6881850.19737389654738638No Hit
CGAGCT6677700.1915188022079066No Hit
TTGGGC6461020.18530434302848714No Hit
GGTTCG6444100.18481907143297407No Hit
CGGGAG6418060.1840722350058369No Hit
CAGGTC6412570.18391477986048424No Hit
GCCTGC6332530.18161920429873082No Hit
CCGGCG6256280.17943232727994396No Hit
GTTACG6255000.17939561642638271No Hit
GGGTCA6222610.1784666597491564No Hit
GATCGG6200900.17784400925633198No Hit
GGTTCC6068970.1740602101076297No Hit
GGAGGT5841150.16752625178080982No Hit
CAGGCT5787170.16597808625328045No Hit
TGACCG5758510.16515610729776004No Hit
GTGTGG5677040.16281951882929363No Hit
AGTCGG5626120.1613591151860592No Hit
TTTGCT5588870.16029077198671743No Hit
CGTTGT5556880.15937328745122903No Hit
TGGCCA5544080.15900617891561628No Hit
GTGCGC5402920.154957660096312No Hit
AGGGGT5395380.15474141022455262No Hit
CAGGGC5321870.1526331173766704No Hit
CTTGTT5315090.15243866457421304No Hit
AGGTCG5277330.15135569439415544No Hit
GACCGG5163320.148085847195311No Hit
AGTGGG5016300.1438692614995465No Hit
TCGGCC4945670.14184356807217718No Hit
TGAGTC4942320.14174748888512226No Hit
TGTAGG4924560.1412381257919596No Hit
GGCTTC4697890.13473714987263613No Hit
GGCCGG4695130.13465799209464463No Hit
TTTGGC4645980.1332483526786004No Hit
GGTCGG4506670.12925289251483393No Hit
GCTCCT4492040.12883329893077028No Hit
GGTGGC4488190.12872287956654302No Hit
TGGTAA4456210.12780568183459806No Hit
TAGGTC4429910.12705138851533126No Hit
TTGTGA4349260.12473831793742754No Hit
CCTGCC4339920.12447044342784762No Hit
GTTCGC4221560.12107583668760355No Hit
GTTGCA4186760.12007776035640641No Hit
CGGATC4184100.12000147061384937No Hit
TGATAG4111540.11792042410259465No Hit
TGGTCA4089830.11729777360977023No Hit
GTAAGG4020190.11530047373320217No Hit
TGATGA4019440.11527896346744361No Hit
CCTGCG3994940.11457629478599733No Hit
CGTCCG3781480.10845418634756797No Hit
TGCGCC3749330.10753211295538442No Hit
GAGGAG3574500.10251792660529255No Hit
TGTCCA3521520.10099844143210794No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)