FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001841282

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841282
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415110915
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTAG110341262.6581151208707676No Hit
GAACCG110103982.6523990582131525No Hit
GGTAAT107708312.5946874945458855No Hit
AAGCGC106229042.559051958438626No Hit
TGGCAT103024732.481860299915265No Hit
AGTGCA102840442.4774207635566508No Hit
TACAGT102407932.4670016205186993No Hit
TACGAA100800892.4282881118652346No Hit
CTTAGC100112612.411707483047031No Hit
GTTGGC99975302.408399692405101No Hit
CCGTCG99743602.4028180516525324No Hit
ACCAGG97404362.346465883702432No Hit
TTAGCG96760992.3309671344103298No Hit
GTCTGC95114282.291297977553782No Hit
GATCAG93499122.2523888585295326No Hit
GAGAAG92696922.233063902933027No Hit
GTGGTG92270112.2227820725937786No Hit
GCTCAA91971562.2155900188748348No Hit
ATTGCT91475602.203642368690787No Hit
TTCACA89488072.1557628760496454No Hit
GCCTGG89175862.1482417536527554No Hit
CAAGCT88350592.128361042975707No Hit
TAATGA87953142.1187864934845186No Hit
GAATAC87097622.098177061906455No Hit
CCTTAT86114742.0744995346605135No Hit
TTCTAC85138132.0509730513831466No Hit
CATGAG84890722.045012957560993No Hit
CCTGCT84885582.044889135232688No Hit
TGACAC84639262.0389552994529185No Hit
TGTGTG82108101.9779797888475181No Hit
AAGTTG80798361.9464282214790716No Hit
ACCTGC79352091.911587653627465No Hit
CAACGG77886641.8762850405896938No Hit
AGGACT77574971.8687769267642602No Hit
AAGAGG76667211.8469090363475507No Hit
CGTGAA75628721.821891867141099No Hit
CCAGCG75586901.8208844255516623No Hit
AACTAG75154241.8104616690216397No Hit
CACATT71805961.7298017808083894No Hit
ATCCGG70555361.6996748929138612No Hit
TCAAGC67618801.6289333177375016No Hit
GGCCAG67576591.6279164810686801No Hit
TACGGC65754341.5840185748910023No Hit
CTCGTC64332551.5497677289454073No Hit
TGCATA63566081.531303507160249No Hit
ACACGA61694771.4862237481758338No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)