FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001841284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415839413
Sequences flagged as poor quality0
Sequence length6
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGAGC134818303.242076046312618No Hit
CCACTT115248432.771464810623903No Hit
CCGCTC111930542.6916770392805454No Hit
ACTAAT109912652.6431513359220715No Hit
CTAGTT102218902.45813400087692No Hit
AGAGGT101678452.44513739730582No Hit
GGCTAC101319732.4365109903615605No Hit
TGCGAC100888262.426135109997378No Hit
CTGAGG100774292.4233943885448874No Hit
ATTCAT100558322.4182007971428146No Hit
CCTGAC93780432.2552078294704594No Hit
CAGCCT93770062.2549584543589187No Hit
TATGGT91973882.2117643764565433No Hit
GAGATA91676352.2046094510045875No Hit
AGGCTT91243002.19418836088055No Hit
AGATGC91191992.1929616854283123No Hit
TACTCG90787202.183227398890158No Hit
GACACG90507802.176508459047868No Hit
CAAGGA89775032.1588869932345736No Hit
AGAACG87980552.1157337964980245No Hit
TTGAAT85249442.0500567607332596No Hit
CCGGAA85162382.0479631640880562No Hit
AATTGC83610582.010645874011947No Hit
TGACCA83573052.009743362156968No Hit
CTCCGC83085151.9980104675647952No Hit
ACGCTA82406281.981685175185643No Hit
CAGTAG81180651.952211537966941No Hit
ATTGAA81089221.9500128526778195No Hit
CACCTA80256961.9299988767538974No Hit
GATCCT79894431.9212808479026975No Hit
TTCGTT78323961.8835145864348362No Hit
TCTTCA76709351.844686857520165No Hit
GAAGAT76007131.827800050304515No Hit
AGTAGG75850231.8240269591761855No Hit
GCTTCT75540831.8165865869957836No Hit
GGATTC75444221.8142633343896146No Hit
CGAATT75439211.8141428551891496No Hit
GTTACA75145161.807071615888415No Hit
TTAGTA74600551.7939749736997634No Hit
GGACTA74142001.782947880411711No Hit
GTACGC73535271.7683573923282736No Hit
TCGTGG73030831.7562267480403546No Hit
ATTCGA73007181.7556580188804758No Hit
GATTCA70493961.695220746187423No Hit
AACAAT67360461.6198671384715522No Hit
GAGCAC50610321.2170640496743872No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)