FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001841288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414805502
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCAT119808302.888300647468268No Hit
TGTGTG97379042.3475831330704No Hit
CCGGAA95697482.307044615816113No Hit
CATAAC95033332.291033497429357No Hit
AGGTGT94192472.2707623101874863No Hit
ACAGCC93646452.257599032521994No Hit
CCACTT93323772.2498199650206185No Hit
TTCACA93255442.2481726869669147No Hit
GGCCGT89174602.1497930854350145No Hit
CTGTAT89002372.145641019004613No Hit
CAAGCT87071992.0991040277956583No Hit
GACCAT82205601.9817866350287705No Hit
GAGATA82191041.981435627148456No Hit
GAGAAG80896291.95022220317608No Hit
AGTGCA80738911.9464281358543791No Hit
AATCGG80684781.9451231869147194No Hit
TTCTAC80666241.9446762304517358No Hit
CTATGC78860151.9011355832980248No Hit
ACTAAT77952911.8792641279864222No Hit
CGACAA77944621.879064275285336No Hit
TCTCTG77085091.858342997581551No Hit
AACTAG76860571.8529303403502106No Hit
TCAAGC76618051.8470837448052941No Hit
GGACTA76185461.8366550017458545No Hit
AGAACG75903901.8298672422141595No Hit
CCTCGG75893171.8296085667639No Hit
GGAGGC75262361.8144011985646227No Hit
AGGTCA74717361.8012625107368996No Hit
TCTCGC74416101.7939998298286797No Hit
TTAGTA73773371.7785050980350787No Hit
GTCGAG73079811.761784972659307No Hit
TATAAG72267891.7422114617949305No Hit
ACGCTA72187281.7402681413806318No Hit
AAGCGC71748971.729701502368211No Hit
CTGAGG71111731.714339121760251No Hit
CTGGAG71079461.7135611667947452No Hit
ATTGAA70977331.711099049018882No Hit
ATCCAC69727781.6809752923672645No Hit
GCCTGG68785191.6582516304231663No Hit
CTACCG67688871.6318218942042866No Hit
ACGTAA67682571.6316700157945352No Hit
GAACCG66405771.6008893247515315No Hit
CCAGCG65832731.587074657461993No Hit
CAGCCT65401361.5766753257771395No Hit
GAGTCG64623881.5579320835527395No Hit
TCGTGG64361111.5515973074050498No Hit
GAGTGA62025151.4952827216838604No Hit
CGCTTG61438861.4811486275801617No Hit
AAGAGG58053481.3995349560237993No Hit
CTCGTC50097311.2077301231168336No Hit
TCCAGA49969681.2046532593967378No Hit
TTAGCG48584351.1712561613997106No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)