FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001841290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415047948
Sequences flagged as poor quality0
Sequence length6
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAAT113326462.7304426041879863No Hit
GGTGGT107581422.5920238979232346No Hit
AGAGGT104311002.513227700622194No Hit
ACCGCT102631432.4727608097944382No Hit
ATGTGA102510902.469856807965715No Hit
CGAATT100304922.416706804197957No Hit
GATTCA98402062.3708600530172963No Hit
CTAGTT97760962.3554136448832654No Hit
TGTGAT96823772.3328333621830124No Hit
ACGAAC95936772.311462337358671No Hit
CGAAGC93001122.2407319551426865No Hit
GCACAT92077252.218472599218826No Hit
AGATGC91554802.205884896942076No Hit
AGGACT90185732.172899069482931No Hit
CTTCAC89542112.157391945472286No Hit
CCGTCG89321742.152082438436727No Hit
GGATCG88520702.1327824996258022No Hit
TACAGT88080692.1221810738840228No Hit
TATTGG87422022.1063113411658163No Hit
GGATTC87391482.105575522565889No Hit
GCTCAA87168382.100200239997332No Hit
GTCTGC86401192.0817158696083955No Hit
ATTCAT86246062.0779782291563094No Hit
CATTAA85842722.0682603157936827No Hit
TTAGGC84783082.04272977154919No Hit
CACATT84542782.0369400790291343No Hit
TCAATG84475902.0353286989386583No Hit
TCTTCA84315012.0314522793400247No Hit
ATCAGC83622382.014764327903628No Hit
TACTCG83517172.0122294400549596No Hit
TTGAAT81379391.960722619932095No Hit
AGTAGG80855241.948093958532232No Hit
AACTCT80395821.9370248759789075No Hit
CTGTTC79699841.920256210976376No Hit
ATCCGG78276021.8859512588169691No Hit
ATTCGA77652181.8709207062505462No Hit
CGTGAA77619771.8701398326151946No Hit
GTTACA77453201.8661265613581592No Hit
AATGTA76250901.8371588238764163No Hit
GGCAGG75427771.8173266574010385No Hit
ACAGTG74587441.7970800809741627No Hit
GACTTG72414711.744731189467295No Hit
TGCGGA72229671.7402729093844358No Hit
AGGCTT71102581.7131172516964233No Hit
CAACGG67459151.6253338999762987No Hit
CGTCAG66152171.5938440442548578No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)