FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001841292

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841292
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416664245
Sequences flagged as poor quality0
Sequence length6
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTA138889703.3333721735590722No Hit
TCATGT124506972.98818464732917No Hit
CGTACT116056452.7853709885761857No Hit
TGCGAC115608762.77462636612844No Hit
GGCGTT107971782.5913377808551825No Hit
CCGACT106771122.5625217733765466No Hit
AGCCTA105895642.541510131256883No Hit
AAGCAT105385062.529256140036686No Hit
GCGCAG103848842.492386645751185No Hit
AGTTCC100487262.4117082568483887No Hit
CAAGGA99874752.3970079314100974No Hit
CAGATC94438722.2665424531447376No Hit
TAATGA94180662.2603489771482552No Hit
TTCGTT92319712.2156859175665526No Hit
TGATAA91989572.2077625115157167No Hit
TATTCT90769082.1784705812710183No Hit
CATGAG89822062.155741969172325No Hit
TAAGTC89373292.1449714265739313No Hit
AGTTAG88899152.133592000436707No Hit
TCGGAC87738792.10574319857947No Hit
CGTCTC87700192.1048167931952024No Hit
GTTGGC87051932.0892584627701853No Hit
AAGTTG84982282.039586574077169No Hit
GCATAA83451402.002845240536538No Hit
CACCTA83336252.0000816244744013No Hit
GTAAGA83047301.9931467841691097No Hit
CCTGAC82751131.9860386628567084No Hit
TTCCAT80394591.9294813741457466No Hit
TGACAC80053001.9212831664977634No Hit
AATTGC79891141.9173985039201047No Hit
TTCTGT79277021.9026595382572362No Hit
GCGTAT78946251.8947210121185225No Hit
CCTTAT78090621.8741857727677114No Hit
GGCCAG78016791.8724138424692525No Hit
TGCATA76671621.8401295748330888No Hit
TCCTCC76086141.82607797316518No Hit
TACGAA73510471.7642615338880352No Hit
GTACGC69755261.6741359700782583No Hit
TTACGT69440181.6665740061281236No Hit
GCTTCT69296981.663137186153326No Hit
GCGGCT67121851.6109337627470293No Hit
AAGGCG63635231.5272543964025518No Hit
CAGGAC62189751.492562674774266No Hit
GACCGA61093451.4662513218526825No Hit
ACAAGT50052141.2012583417134821No Hit
CCATGA49406181.18575521160929No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)