FastQCFastQC Report
Wed 27 Sep 2023
EGAF00001841294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416325165
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTAG123342972.9626594875666474No Hit
TAGAGC109607812.632745248536682No Hit
TAGCTT107006782.570269323018223No Hit
GTACTT106619852.560975385669997No Hit
CTCCGC101894532.4474746800376574No Hit
CCGCTC101756392.444156600526418No Hit
GCCATA100406252.4117266608181134No Hit
GAATAC100315162.4095387075628736No Hit
CGAGAG96576212.319730300232992No Hit
GGTACC96122522.3088328086052643No Hit
AGACGG93751792.2518886169179804No Hit
GACTAA93595642.248137942850512No Hit
ATACCT92742452.2276445864136027No Hit
AACCTT91985842.209471051311539No Hit
GTGGTG91958792.208821318788164No Hit
CAGTCC89816362.1573608215587927No Hit
ATTGCT89617392.1525816245097746No Hit
AACATA89088922.139887940715762No Hit
GCCAAT88528892.126436195611668No Hit
GGCTAC88271072.1202434400044012No Hit
GTCTCA88086822.1158178127425953No Hit
CTTAGC87670302.1058131328669503No Hit
GATCCT86752882.0837769919577163No Hit
AACAAT86739772.0834620938659807No Hit
TGACCA86531122.0784503862503723No Hit
CGATGT86456862.0766666843211365No Hit
CCTGCT83532272.006418948996273No Hit
GAAGAT80255701.9277167643709454No Hit
GATCAG79384771.9067972986931983No Hit
CATACG79137481.9008574703861585No Hit
ACTTGA78699301.890332524098081No Hit
TACGGC77379761.8586375868006921No Hit
ATGCCG76846681.84583317225131No Hit
AGTCAA76346661.8338228485419563No Hit
TATGGT76070731.8271950964097976No Hit
ACCTGC75950501.8243072094861237No Hit
ACCAGG74486121.789133260777066No Hit
CGTTGC73788721.772381931320438No Hit
ACTAGC73397691.7629895132570235No Hit
GAGCCA71984311.7290405685661592No Hit
CTTGTA70744951.6992715297428633No Hit
ACACGA69948191.6801336042225552No Hit
CGAGCC69854651.677886802735069No Hit
GAGCAC66676871.6015575229520418No Hit
TCCACG62548341.5023915261043612No Hit
GACACG48521131.1654623375937412No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)