FastQCFastQC Report
Mon 18 Sep 2023
EGAF00001841296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416846093
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAAC118623202.845731362054532No Hit
TGGCAT108335562.5989342786043577No Hit
CTATTA105196762.5236355040036322No Hit
AGATGC105141562.5223112742476874No Hit
AATCGG103326622.4787714635003186No Hit
ACACGA98068672.3526349807961378No Hit
GATCCT97456222.3379425077159115No Hit
GAGTCG96986182.326666403468006No Hit
GGAGGC95821502.2987261152043468No Hit
GCATAA95382422.2881927311239068No Hit
TCTCTG95158502.2828209643313127No Hit
TGCATA91702472.1999119468777173No Hit
GACTAA88701582.1279215875966No Hit
TGTGTG87439152.097636309140122No Hit
CTTCAC87394392.096562531533671No Hit
CGAGAG85554142.0524155422514663No Hit
GAGCCA85482032.0506856471844155No Hit
AATGTA85200772.043938312743164No Hit
CTATGC85150782.042739069165271No Hit
AGACGG83063281.9926606341012294No Hit
CTAGTT82341351.9753417720050455No Hit
AGTTAG82162441.9710497802362754No Hit
AGGTCA81829711.9630676975062833No Hit
TATTGG80878471.9402477642989449No Hit
GGATTC80326321.9270018682890713No Hit
GGATCG79227871.9006504158358515No Hit
GCCAAT79163401.899103801843718No Hit
CAGGAC78621691.8861083579833384No Hit
TTAGCG77104881.8497205874015474No Hit
AAGTTG75759901.8174549617285245No Hit
ACAAGT72390541.7366251289297796No Hit
GTCGAG70617941.694101040788692No Hit
TGACAC70045391.6803657555211868No Hit
TATAAG69979241.6787788388843075No Hit
CGTCTC68472901.6426422401420948No Hit
TGACCA67677831.623568773619284No Hit
CGATGT67564291.6208449865451902No Hit
ATTCGA67428331.6175833510810909No Hit
CGCTTG67107101.609877149550254No Hit
GATCAG65720811.5766205106305264No Hit
CTACCG64958661.5583367840273845No Hit
GAACCG64462231.5464275924015918No Hit
CGACAA61817921.482991469467845No Hit
TTAGGC58109721.3940329770585136No Hit
ACAGTG56530351.356144412753318No Hit
CAGATC46608961.1181335457544999No Hit
GGCTTC5932750.14232471167721847No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)