FastQCFastQC Report
Wed 27 Sep 2023
EGAF00001841298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415331640
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAT279702936.734447922147227No Hit
CGAGCC106650932.567849875342991No Hit
ACCGCT98273792.366152263285311No Hit
AGTAGG96862422.3321705035522937No Hit
CAAGCT94225562.268682443745437No Hit
TTAGTA92990282.2389404284248604No Hit
CCGACT91821872.2108084517712157No Hit
GAATAC87677372.11102072550986No Hit
CTGTAT87448842.1055183756286904No Hit
GGTGGT86614562.0854312953378655No Hit
GGCGTT86551132.0839040820487456No Hit
TTCTAC86508132.0828687648261037No Hit
CAGTAG85906842.068391418481867No Hit
CTGGAG85828882.0665143642800725No Hit
ACGCTA85679742.0629234989176357No Hit
ATCCAC85143872.050021279380497No Hit
AGCCTA85112672.049270072465464No Hit
TAATGA85050682.04777753026473No Hit
TACAGT83703382.0153383931934488No Hit
CGTCAG83185472.0028685991753483No Hit
ACGTAA83068452.00005109170108No Hit
GACCAT81901861.9719629354508124No Hit
ATGTGA81886551.9715943143652623No Hit
ATCAGC81077741.9521204789502673No Hit
ACCAGG80988891.9499812246425532No Hit
AGGACT80642871.9416500510291004No Hit
CATTAA80181161.9305333925438477No Hit
AGAACG77553181.8672591377820384No Hit
AAGAGG76597361.8442457213228445No Hit
GCGTAT76312221.8373803642794946No Hit
CAACGG76303821.837178116263909No Hit
TCAATG76061651.8313473541288594No Hit
TTCCAT73701851.7745301080360745No Hit
GGCAGG71772861.728085536656923No Hit
GGTAAT71645341.725015219163173No Hit
CTGAGG71439561.720060624324215No Hit
TGCGGA70832971.705455669113001No Hit
TACGAA70407121.6952024170371418No Hit
AACTCT70104501.6879161915042156No Hit
GACACG66516241.6015211362177946No Hit
AGAGGT65758091.5832670489539395No Hit
TCCTCC65133721.5682340021097356No Hit
TCTCGC62805951.5121879469620951No Hit
GCGGCT62511721.505103728673308No Hit
GCCTGG61379371.4778399738579993No Hit
ACTTGA58645941.4120267841862468No Hit
NAGCAT4286830.10321462626829972No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)