FastQCFastQC Report
Mon 18 Sep 2023
EGAF00001841300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841300
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417886407
Sequences flagged as poor quality0
Sequence length6
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACAT121694852.9121514354497777No Hit
ATCCGG119988632.871321679530007No Hit
TGCGAC113589852.718199206704515No Hit
TTACGT110411512.6421416956977017No Hit
CCGCTC110073042.63404212618957No Hit
TTGAAT105031382.5133954644282075No Hit
AACCTT101833622.4368732338307426No Hit
TCTTCA100247432.398915789572452No Hit
GAGAAG98890552.366445721695848No Hit
AACAAT98205522.3500529894000595No Hit
TAAGTC97936052.343604586305675No Hit
CGAATT92483192.213117929916299No Hit
AGGCTT91258082.1838011112909927No Hit
ACCTGC90406762.1634290679380728No Hit
GTTACA88512992.1181112502661517No Hit
TATGGT88470422.117092552378714No Hit
TGTGAT88152902.1094943152817125No Hit
TTCTGT87496152.09377832191608No Hit
CCTGAC86685132.0743706554685803No Hit
AGGTGT85491782.045813851992558No Hit
TTCGTT83884072.007341435252762No Hit
CCGTCG82888371.983514386003946No Hit
TTCACA82873421.9831566332809671No Hit
CTCGTC82680171.9785321708250732No Hit
TCGGAC81981541.9618139912361399No Hit
TATTCT81375361.9473081353421482No Hit
AGTGCA81323691.9460716749276796No Hit
CTCCGC80648951.9299251817970715No Hit
ATACCT79646111.905927272719354No Hit
CGTACT78266761.8729194989106215No Hit
AGTTCC78083731.8685396005235462No Hit
GAGTGA77767261.8609664898719716No Hit
GACCGA77313001.8500960716819872No Hit
ATTCAT77028171.8432801045859335No Hit
TCAAGC75317911.8023536716761404No Hit
CCAGCG74725391.7881746988721747No Hit
GATTCA73794831.7659064464377279No Hit
CACCTA72499321.7349049594714383No Hit
TACTCG72423131.7330817367313889No Hit
AGTCAA71424451.7091833762374566No Hit
ATTGCT70551031.6882824810331771No Hit
AATTGC70206441.6800364602431301No Hit
GTACGC69744871.6689911141330807No Hit
CAGTCC65909681.5772152167658327No Hit
TCTTCT4622670.11062025283823122No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)