FastQCFastQC Report
Tue 8 Aug 2023
EGAF00001841302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409496764
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTCCT104206992.544757350023894No Hit
TCGGTAAT99041162.418606658391078No Hit
GTTGGTCG92359492.255438824420112No Hit
CCGTACAC89639742.189021938156268No Hit
ATAACGCG87260042.1309091468180688No Hit
GCCACGAC84789832.0705860816033215No Hit
TCTGCGCA84699642.0683836221963405No Hit
TCTACCGT83280732.0337335315304226No Hit
ATGTTGTG83114232.029667565333923No Hit
TATCTACT82681582.0191021582773727No Hit
GGCGCCAT82471542.0139729358154344No Hit
GCTCCAGA82128012.005583858533251No Hit
CGTGCCAC81624801.993295360937211No Hit
TATGGTGG81174511.9822991812457886No Hit
GTCTGGCG79615641.9442312369530714No Hit
AGCATAGT78570001.9186964808347056No Hit
CCGTGGCG78348301.9132825186379252No Hit
TCGAGCAA75735531.849478107231148No Hit
TATTAGAG74247431.8131383817235731No Hit
GAGGTGCG73871851.8039666364738354No Hit
CTCAGAAC73119011.785582120009134No Hit
TCGGCCAG73087171.7848045802872328No Hit
TGCCTAGA72516771.7708752882843293No Hit
TGTACCTA72443321.769081623316564No Hit
CAATATGG71574351.7478611870056195No Hit
TGCATCAA71297261.7410945889672524No Hit
AGGCGTGC70050741.710654299578299No Hit
AGCCATTG68635881.6761031107928364No Hit
GAGTGGCA68390571.670112587263327No Hit
CCAGCCAA68106781.6631823737684042No Hit
CTAACATA67914261.6584809935152502No Hit
TATATAGC67804271.6557950138038207No Hit
GGAGAACC67549421.6495715214003497No Hit
GTATGCCT67453301.6472242501042085No Hit
CGAACGAG67407161.6460975012735388No Hit
GAGAGCGG67215071.6414066217138652No Hit
TGGCTTCC65896961.609218088961504No Hit
CGAACTGC65426601.597731795506936No Hit
ATATTACA62917201.536451701972424No Hit
TCGTCTGG62743541.532210887019366No Hit
AGGATTGG62447771.5249881193200345No Hit
ATGCAACT62114541.5168505702770338No Hit
AGCTGTGG60281521.4720878233850951No Hit
ACTCGGAA59650241.4566718285470994No Hit
CCTTACTG57401101.4017473407921728No Hit
TGTACGCC56393591.3771437275631315No Hit
CGCTGAAG55951551.3663490146652295No Hit
ATGCTAGG55053731.3444240550823987No Hit
CTCACGCC40580190.9909770617869889No Hit
TATAACGG39030240.9531269458334475No Hit
AGATGCGA37554640.9170924730433279No Hit
ACCGTTCA32427500.7918865996215784No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)