FastQCFastQC Report
Wed 6 Sep 2023
EGAF00001841304

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841304
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411079700
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGAGTAG105276592.560977591450028No Hit
TCGCGGAT96767162.353975640246891No Hit
GATGTCCA96070672.3370326970658004No Hit
GGCCTGCT94659512.3027045606971104No Hit
AGGTGTAA91142452.2171479155988485No Hit
ACTAAGTG91068752.2153550759135032No Hit
CTTAGATT89412062.175054131838668No Hit
AACGAGAT87453752.1274159244545525No Hit
AACGCTGG87039532.117339532942152No Hit
GGATACTA86291382.099139899148511No Hit
TGAGGCGG85017372.0681480987750063No Hit
TGCCTGAC84512722.055871890536069No Hit
GTCCTCAA83059822.020528379289953No Hit
AGTTCGTC82956812.0180225391815747No Hit
GCAACAGC82872202.0159643008399586No Hit
GGTGCGGA80985521.970068577942428No Hit
AAGCGCAC80947321.9691393177527377No Hit
ACGCGACC80946611.9691220461628245No Hit
AAGACACT80203641.9510484219969995No Hit
CCGACCGC80039381.9470526031813298No Hit
CACGGCAA80000211.9460997465941519No Hit
CAGCGTCT79902331.9437186998044416No Hit
GATATATG79199621.9266244477652388No Hit
AACTCTAC78707151.914644532434951No Hit
ATCCTAAC78523781.9101838402626061No Hit
CATAATAA77846611.893710878936615No Hit
CGCATATA77480071.8847943598285197No Hit
CGGCCAAG76628671.864083047642586No Hit
GTCCAGAG76446101.859641816416622No Hit
CTACGGCC76061361.8502825607783602No Hit
AACTAGTC75358061.8331739562912008No Hit
CTCTATAG74644561.815817224737685No Hit
CCGGTCTT74308551.807643383995853No Hit
AATTGCTA73684831.7924706571499396No Hit
AGACAGAG73522521.7885222743910731No Hit
CAATTAAG73231991.7814547884509986No Hit
TACGTCAG72763031.7700467816824814No Hit
CTGCTCAG72688921.7682439682621156No Hit
GGTGAGAT72686441.7681836393283346No Hit
CCAATCTA70762491.7213812795912813No Hit
CGAAGCAA69950151.7016201481123976No Hit
TATAATCC67911311.652022953213209No Hit
GGCCAATA67377001.6390252303871973No Hit
TAATGATT63948671.5556270475044134No Hit
CGTCCGAA58144091.4144237723244422No Hit
GGTCAACT57074001.388392567183444No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)