FastQCFastQC Report
Wed 6 Sep 2023
EGAF00001841308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405369335
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCACGT119746772.95401648967848No Hit
CCAGATTC118123332.913968073090679No Hit
GTGGCGAA112645442.7788347631179353No Hit
CTTCCTGT107601832.6544146463372718No Hit
ACGAGTTC107542132.6529419153029914No Hit
TTCGTTCG105701762.607542082580075No Hit
CTCTCTGC97927872.4157690664983327No Hit
TCAGGTAC97615732.4080689280554486No Hit
TGGCCTAT96506132.380696359284306No Hit
ACCTGAAC96341202.3766277239495683No Hit
CTGATCCT93334632.30245906489202No Hit
ATCTGTCT90084122.222272683749006No Hit
TTGAGAGT88948642.19426168484106No Hit
TTGGAACG85744092.1152090845746883No Hit
ATTGAGTA82457302.034127717134795No Hit
TTGTCACA81058151.999612279503086No Hit
GGTTGCAG80430121.9841194943865204No Hit
GACGCTCA79602211.9636958972241942No Hit
CTGTAGCA77938531.9226548056477926No Hit
TGATAAGG77895831.92160144525979No Hit
TCCGATGC77542941.912896050708917No Hit
AACTACCT76525521.8877974575950596No Hit
CTGGCCTC76415951.885094490435494No Hit
GCCTCATT75497251.8624312073334308No Hit
AGAGTATT75303851.8576602495104864No Hit
CGCGCGCT75215971.8554923499578477No Hit
CTCACCTT75160731.8541296420460616No Hit
TAACATTA72913691.7986977233983423No Hit
AACCTTCT72760731.7949243743363072No Hit
CATTAAGT72688201.7931351418083954No Hit
AGGAATAC71074921.753337360853899No Hit
CTCTTAAT70846181.7476946054639282No Hit
GAGCCGTC70640651.7426244143504344No Hit
CAGATTCA69851821.7231648762973153No Hit
GGAAGGCG69100621.7046336275041623No Hit
ACCAGCGG68429961.6880892088199027No Hit
CCTTAGCC67668831.6693129982316004No Hit
ATAGGAGG65763811.6223183236097523No Hit
TAAGCAAC63995341.5786921820319735No Hit
ACCACCAA63702271.571462478778766No Hit
GGATCAGA60010961.4804020634663941No Hit
CGCTACAA55430381.3674043696472502No Hit
CTCCTTCA53326421.3155020717094943No Hit
TGCCAGGT50184661.2379984292595787No Hit
CGTTCGCG46915231.15734531325612No Hit
CTATGGAG45451201.1212293598873235No Hit
CCAGGTTC5652140.13943185909708736No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)