FastQCFastQC Report
Fri 15 Sep 2023
EGAF00001841310

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841310
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences375354624
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCAACGT120603353.213050866798433No Hit
GGTGAGAT120397963.207578974703133No Hit
TATATAGC117491993.1301596540342604No Hit
TATGGTGG107440482.8623726239216385No Hit
CAGAGGAT104676922.7887473153920705No Hit
CTAACATA100986012.690416037075382No Hit
CGTGCCAC98399262.6215012073489206No Hit
TAATTGAT97552262.59893587990007No Hit
AAGCGCAC96898682.5815235461172845No Hit
GTTCGGAC96297552.5655085575820693No Hit
GGATACTA95778332.5516757720826693No Hit
CACTCTCG95101082.533632834639064No Hit
CCGACCGC91395172.434901934230601No Hit
CCGTACAC90676062.4157437847362178No Hit
ACCTGAAC90507942.4112648203316125No Hit
CATCGAGC90344692.4069155998994702No Hit
CGAACTGC90273622.4050221904286437No Hit
CGCGTGAA89925772.3957549541204No Hit
ATCTGTCT87298462.3257595462577814No Hit
ATCATGGA87041922.318924942829531No Hit
TGGCTTCC82956982.2100961249913893No Hit
AGAGTATT82013372.1849569648567857No Hit
AGCCATTG81484202.1708590967031753No Hit
AGGAATAC81360102.167552889930563No Hit
ACGAGTTC77535022.0656471252103183No Hit
GTCTGGCG74498271.9847436327306307No Hit
GCTCCAGA74276461.9788342876522016No Hit
ACAGCACG74213091.9771460175218196No Hit
GTCCTCAA72678711.9362678745100528No Hit
ATCCTAAC72664021.9358765112748417No Hit
ACGCGACC71868151.914673362329486No Hit
CAATTAAG67440361.796710515547026No Hit
TAACATTA64365491.7147914501247759No Hit
TCCTGGAA58225051.5512010849771762No Hit
TATCTACT50113081.3350862569898698No Hit
ATAGGAGG44132941.1757665199296972No Hit
TATTAGAG43912321.169888878203882No Hit
GGATCAGA39096111.0415779505622926No Hit
GTTGGTCG20055030.5342955359462949No Hit
ATGCAACT19123070.5094667489696357No Hit
CGTCCGAA9976710.2657942479483082No Hit
CTACGGCC8599840.2291124033148983No Hit
CTCTATAG4399290.11720356480808933No Hit
TCGCGGAT3933140.1047846422693863No Hit
ACAGCCCG3818810.10173872268588331No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)