FastQCFastQC Report
Tue 8 Aug 2023
EGAF00001841330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416607565
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATGCCT109192542.6209927320930912No Hit
GATTGGAT104040942.4973367922399583No Hit
ATCTGTCT102156342.4520999756689488No Hit
TAATTGAT99245932.382240226482685No Hit
CTCTCTGC95642772.2957521186635197No Hit
TCTACCGT95090392.2824931179538233No Hit
TCTGCGCA94592882.270551184062152No Hit
CTTAGATT93986482.2559955194284576No Hit
TGTACCTA93364582.24106780202131No Hit
ATAACGCG93317692.239942282373101No Hit
AGCATAGT90464122.1714468867121988No Hit
AAGCGCAC90263502.166631323653472No Hit
TAAGCAAC90226892.1657525590059796No Hit
ACGTGCGC90068442.1619492195250944No Hit
GACGCTCA89785422.155155775915879No Hit
ACCAGCGG89356962.1448712771214318No Hit
ACTAAGTG89200032.14110442281575No Hit
CTCACGCC87989602.112049981617593No Hit
TGCCTGAC83963482.015409393730044No Hit
GCAACAGC83290371.9992524619662153No Hit
ACCGTTCA83051081.9935086872462335No Hit
CCAGCCAA82530401.9810105944667615No Hit
TATAATCC81497271.9562119569288186No Hit
TGCCTAGA78841541.8924653948614687No Hit
GGTGCGGA78577181.886119854784682No Hit
CATAATAA76585791.8383197146216008No Hit
CCAATCTA76543791.837311571622565No Hit
ACATCCAG76318081.8318937631389385No Hit
GGAAGGCG76140161.8276230773677862No Hit
CTCTATAG75742521.8180783635073934No Hit
CATCCTCA75697421.8169958099536672No Hit
TCGAGCAA75157791.8040428526543921No Hit
GGTGAGAT75121621.8031746495049843No Hit
CGTTCGCG74478651.787741180359987No Hit
CCTTAGCC73985491.7759036612789305No Hit
TGAGGCGG73942481.7748712748411086No Hit
GATATATG73939271.7747942239118968No Hit
GTCCAGAG71683961.7206591051701137No Hit
AAGTTACG71266041.7106276022616151No Hit
GGAGAACC71006901.704407359957566No Hit
ACTTCTAT70496631.6921591426214262No Hit
AGAGTATT70293971.687294612617032No Hit
AACCTTCT68427371.6424898573313234No Hit
TAATGATT66496121.596133281929242No Hit
CACTCTCG64907091.5579911516969212No Hit
GGTCAACT57006221.3683433712971582No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)