FastQCFastQC Report
Wed 20 Sep 2023
EGAF00001841336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413737403
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCGAA110005122.6588149681985604No Hit
GATTGGAT105934432.560426715879976No Hit
TGTACCTA105094472.5401249497377445No Hit
CAGCGTCT102404802.4751158405661475No Hit
TAGCTGGT101923252.463476815510441No Hit
TTGTACTC100653452.4327858508842626No Hit
TAGAGTAG97860922.36529062372444No Hit
TCAGGTAC97562412.3580756608558304No Hit
GAAGCGAT95635142.3114936988184267No Hit
CGCTGAAG94820982.291815516616466No Hit
CTCTATAG94523692.284630041050458No Hit
CTCAGAAC92652312.2393989358511055No Hit
CTCCTTCA92151432.2272927062385994No Hit
GACGCTCA91894642.2210861124392953No Hit
ACCAGCGG91476602.210982119013301No Hit
ACTTCTAT90870162.196324512628122No Hit
GGATCTCT90430402.185695548536133No Hit
ACTAAGTG89923182.173436081629777No Hit
GATTATCT87489232.114607704442907No Hit
AACTCTAC86700772.0955506891892006No Hit
TGCATCAA85420162.064598447726033No Hit
GTCCTCAA85250912.0605076887380185No Hit
ATCATGGA84830432.05034472070682No Hit
AAGTTACG84600232.0447808050847174No Hit
AAGACACT84557912.043757934063312No Hit
GAGTAATT84139242.0336387135876133No Hit
ATATTACA80756281.9518728404644625No Hit
GTCCAGAG80724841.9511129381744585No Hit
GCTCCAGA80399171.9432415202741533No Hit
GAGTGGCA79668351.925577659218787No Hit
AGACAGAG77474741.8725582806444985No Hit
AATTGCTA77458321.8721614105553805No Hit
ATCCTAAC77278211.8678081662343686No Hit
CATCCTCA77155671.8648463842172855No Hit
CAACCGGT76246641.8428752016892223No Hit
TCGTCTGG76238961.842689576702351No Hit
AGCCATTG75221621.8181005501211596No Hit
AGGATTGG74985501.812393548571677No Hit
TGCCAGGT74454681.7995636715494152No Hit
GGAGAACC72100711.7426684045773837No Hit
GATATATG69675451.6840500639967522No Hit
GTCTGGCG69513241.680129461246703No Hit
TTCACTTG68776031.662311154401479No Hit
GTCAACGT67084571.621428701238307No Hit
AGGCGTGC64042141.547893411029121No Hit
CCGTACAC59676931.4423866338233868No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)