FastQCFastQC Report
Wed 27 Sep 2023
EGAF00001841338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411746334
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCAT125546993.0491343731065252No Hit
CAGAGGAT104049902.527038892834441No Hit
GGTGAGAT102036122.478130624959007No Hit
CTGTAGCA99159052.408255807324322No Hit
AACGAGAT99077392.406272547407793No Hit
CTTCCTGT97231952.361452719090876No Hit
ATAACGCG96984082.3554327504953574No Hit
CATTAAGT93653702.2745484845045394No Hit
GTCAGATG93649682.274450851576981No Hit
TGGCCTAT93211732.263814448436595No Hit
TCTGCGCA92044042.2354549973965283No Hit
CCGGTCTT91645562.225777194169263No Hit
GGCACGTT91504982.2223629561204548No Hit
GATGTCCA91467862.2214614301823996No Hit
CTCACCTT90891902.207473206063809No Hit
CTGATCCT90564052.1995107793722335No Hit
GAGAGCGG90093752.1880886983197767No Hit
ATTATCGT89512042.17396082511326No Hit
AAGCGCAC89402382.171297534855526No Hit
CGCATATA87648982.1287130634173415No Hit
CGCGTGAA87275432.119640730061728No Hit
GGCCTGCT86790152.107854832776726No Hit
CGAAGCAA84631362.055424736337786No Hit
GGATACTA84567002.05386163802493No Hit
TACGTCAG83145882.0193471837930197No Hit
TGCCTAGA82264691.9979459003513556No Hit
CGCTACAA81824111.9872456229324924No Hit
CCAGCCAA81772891.9860016531440448No Hit
CACGGCAA81740841.985223261271344No Hit
TTCGGAAG80875841.9642151810876838No Hit
CTGGCCTC80381481.9522087596777487No Hit
CTCTCTGC79952411.9417880233027163No Hit
TATAATCC79911351.9407908073809346No Hit
CGTCCGAA79477071.9302435367888424No Hit
AACCTTCT78934471.9170655202482023No Hit
AACTAGTC78228621.899922683950357No Hit
CCAATCTA77752261.8883534249026248No Hit
ACGCGACC77338331.878300390647801No Hit
ATGTTGTG76050721.8470284668035444No Hit
AGTTCGTC74937231.8199853602096674No Hit
GGCCAATA74593821.811645030942765No Hit
CCGACCGC72480931.7603296985274433No Hit
CAATTAAG71649591.7401391119611038No Hit
CGGCCAAG68529281.664356773605178No Hit
CTACGGCC62685401.522427641092246No Hit
CCGTGGCG53253111.2933475201263116No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)