FastQCFastQC Report
Wed 27 Sep 2023
EGAF00001841342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407373559
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGCA100543632.468094155320473No Hit
GCCGTCCT99765802.4490003780535003No Hit
ACAGCACG99127012.433319684353888No Hit
TGGCTTCC98406772.415639597267038No Hit
GTTGGTCG97586102.3954942053566124No Hit
CCAGCCAA94628582.3228945008676916No Hit
GGCCAATA94098802.3098897294902736No Hit
AGCATAGT93938712.305959921173971No Hit
GGTGAGAT93740332.3010901893119677No Hit
TTCGGAAG91142812.23732758266719No Hit
CATCGAGC89713872.202250686574383No Hit
ATGCAACT87929362.1584454380359035No Hit
ATAACGCG87496292.1478146548043386No Hit
TACGTCAG86606562.125974012957478No Hit
CTGGCCTC86579272.125304111845904No Hit
AAGCGCAC86345682.1195700627197556No Hit
CGAACTGC85782192.1057377953192096No Hit
CCGGTCTT83978102.0614519068479846No Hit
GAAGCGAT83775392.0564758843369115No Hit
TCGAGCAA83463372.04881657525544No Hit
CGTGCCAC82772432.0318557297431274No Hit
CTAACATA80734621.9818326009715324No Hit
CATTAAGT79882391.9609124901501032No Hit
CCGTACAC78731321.9326566062182744No Hit
CAGCGTCT78585151.929068499018612No Hit
GAGGTGCG76084121.8676744800710052No Hit
AACTAGTC75884941.8627851102137927No Hit
AGACAGAG74626031.8318820245277627No Hit
TCCTGGAA74526581.829440776248318No Hit
CTCTATAG74478451.8282593053615441No Hit
GTCAGATG74346161.8250119173787616No Hit
GAGACCAT74247571.8225917799441667No Hit
GTCTGGCG71863801.7640762001443495No Hit
GATTATCT71354641.7515775980934492No Hit
GTTCGGAC70154561.7221186414801162No Hit
ACTAAGTG69722221.71150577791918No Hit
CAACCGGT68941291.6923359034207714No Hit
TGCCTAGA68299711.676586722212867No Hit
GCTCACGT64375651.5802608828620612No Hit
TTGTACTC62823711.5421646450058386No Hit
CTGTTCGC61132691.500654341682495No Hit
CAGATTCA59940131.4713799822241285No Hit
ATATGGTT59155321.4521148634489554No Hit
GTTGTGTG58146831.4273589612132878No Hit
TCTACCGT57425451.4096508899832647No Hit
GTATGCCT56658771.3908308172745203No Hit
GGCGCCAT56190531.379336698678571No Hit
TCGGCCAG45867931.125942736995358No Hit
CCGTGGCG44023571.0806683209402896No Hit
CAATATGG40756481.0004694487302255No Hit
CAAGCACT39607140.9722560319630367No Hit
GTCATTAG34305160.8421057096638911No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)