FastQCFastQC Report
Wed 27 Sep 2023
EGAF00001841356

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841356
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416957141
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCTAGA115413662.767998162190008No Hit
GTCAGATG109528072.626842407287132No Hit
CCGGTCTT106464962.5533789814622696No Hit
GTGGCGAA106087072.544315939656733No Hit
ACCAGCGG103894102.4917213253819774No Hit
GCAACAGC102740442.4640527741914844No Hit
ACGCGACC97265822.3327534280076043No Hit
TTCGGAAG97265092.3327359202129605No Hit
AGCTGTGG93223992.235817086053936No Hit
CATAATAA91957782.2054492166618154No Hit
TGCCAGGT90102952.1609643087993065No Hit
TGAGGCGG89931182.15684470073628No Hit
AGCGCTTC89821842.1542223688645254No Hit
CTTCCTGT89286222.1413764442518564No Hit
CTCACCTT89114942.1372685879961937No Hit
TAGAGTAG89111952.137196877987994No Hit
AACGAGAT88661322.1263892923709395No Hit
CAGCGTCT88301972.117770900582801No Hit
GCCACGAC86936612.0850250889455326No Hit
GACGCTCA85485562.0502241500164162No Hit
TAGTCGTG85430332.0488995534435515No Hit
ATCCTAAC84650272.0301911557859613No Hit
ATAACGCG84121822.0175171912932894No Hit
AAGCGCAC83435842.0010651406495517No Hit
CCAATCTA83218801.9958598094857907No Hit
CAATTAAG82495221.9785059875014828No Hit
AACTAGTC82445641.9773168964625072No Hit
GGTGAGAT81839521.9627801505862685No Hit
TATAATCC81638821.9579667062231705No Hit
CTGTAGCA81346791.9509628688671385No Hit
GCCGTCCT81314771.9501949242308338No Hit
GTCCTCAA80371131.927563341576155No Hit
AATTGCTA79745781.9125653972190872No Hit
GAGGTGCG77380991.8558499757172882No Hit
AGACAGAG76025251.8233348832368361No Hit
CCAGATTC75938031.8212430615260768No Hit
CGCTACAA75539871.8116938786281633No Hit
ACCACCAA74876251.7957780941327013No Hit
TTGTCACA74312611.7822601580050648No Hit
CACGGCAA71741341.720592668779835No Hit
GGTGCGGA68538031.6437667870521013No Hit
ACCTGAAC65361441.5675817385749007No Hit
AGGAATAC62824341.5067337580386948No Hit
TCCGATGC55890271.3404320133708898No Hit
TATGGTGG55142721.3225033121569683No Hit
TATCTACT49324331.1829592336925583No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)