FastQCFastQC Report
Fri 15 Sep 2023
EGAF00001841364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404279995
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCTGCT165197044.0862036717893995No Hit
GGCCAATA131286203.247407777374688No Hit
GTGGCGAA109884382.718026648832822No Hit
GATTGGAT108716532.6891394910599025No Hit
GTCAGATG107349232.655318871268909No Hit
TAATGATT104457772.5837976474695465No Hit
TGCCAGGT99887742.4707564370084647No Hit
CGAAGCAA92171502.279892676856296No Hit
CAATTAAG90174702.230501165411363No Hit
CCGGTCTT88401322.186636021898635No Hit
TCTACCGT86615352.142459460552828No Hit
TTCGGAAG85195142.1073300943322706No Hit
TAGTCGTG82390592.0379586182591103No Hit
TGATAAGG80573271.993006604247138No Hit
AATTGCTA79927681.9770377210972312No Hit
AACTAGTC78496801.941644428881523No Hit
AGTTCGTC77399331.9144981437926454No Hit
ATCCTAAC77311151.9123169821944814No Hit
CAGCGTCT76968031.903829794991464No Hit
TAGAGTAG75439221.8660141716881142No Hit
ATAACGCG75318751.863034306211466No Hit
GTCCTCAA74805421.850336918105483No Hit
ACGCGACC71304801.7637479193102297No Hit
GCGCTGGC71236611.7620612170038241No Hit
TGCCTAGA70731021.7495552803694876No Hit
GGAGAACC70057221.7328886134966932No Hit
CGCATATA69918211.7294501549600543No Hit
TGTACCTA69334261.7150059576902885No Hit
CATCCTCA68041501.683029109565513No Hit
TGCCTGAC67783951.6766585247434764No Hit
CTTCCTGT67746001.6757198188844344No Hit
AAGTTACG67230811.6629764230604582No Hit
GCCTCATT66176651.6369014252115048No Hit
CCAATCTA65629001.6233551205025616No Hit
AGCGCTTC65556601.6215642824473668No Hit
TATAATCC65506621.620328010541308No Hit
AGACAGAG64819291.603326674623116No Hit
CAACGTAA64226721.58866925878932No Hit
ACCTGAAC64194951.587883417283608No Hit
CGCTACAA58855831.4558185101392416No Hit
TATCTACT55165591.364539197641971No Hit
TACGTCAG54182781.3402290657493452No Hit
AGGAATAC52661911.3026098409840932No Hit
GTATGCCT50165301.240855363125252No Hit
TATGGTGG49084201.2141139954253735No Hit
ACTTCTAT42185731.0434780479306178No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)