FastQCFastQC Report
Wed 6 Sep 2023
EGAF00001841372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001841372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406345849
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATGTAT136106143.3495147135119376No Hit
CGCGTCGG118989822.9282892957521023No Hit
GGCCGTCA112353632.764975458134925No Hit
GAGGTATA107469112.644769480590904No Hit
CAGTGGTC106823022.6288694781277315No Hit
TTATGCTA101830172.5059975449632317No Hit
ATCGCTAA97457812.3983956090566587No Hit
TAATAGGC94447542.3243141336974746No Hit
TAACGGTC92125862.2671785678804857No Hit
ATAGTTGC90789322.234286882059425No Hit
TGAGCGTA90236882.2206915666068485No Hit
CGAGAGGA89023702.1908357183685663No Hit
ATCGCGTG88535972.1788328887297186No Hit
TAGATCCG88492892.177772708095266No Hit
TATCAAGA85235312.0976050379193123No Hit
ACTACATA83155632.046424990058161No Hit
GACCTGTG82367562.0270309196637073No Hit
CTTACAAG80998021.99332711775776No Hit
ACTCATAG80333781.9769804514478997No Hit
GATATTGT79532911.957271378450823No Hit
GATACACC79141181.9476310683316467No Hit
GGTAGCGA78970861.943439564950496No Hit
ATCGGCGC77893511.916926435736766No Hit
GAACAAGT75884861.8674944062243886No Hit
TTCACGGT74554061.8347439793829419No Hit
GGTTGGCC74081961.8231257974533905No Hit
TGTCTTAA73882991.818229229653088No Hit
CGGATGCG73006571.7966609030131868No Hit
GGACCGGC70536471.7358727835804715No Hit
ATAGGTAT70291751.7298503275715755No Hit
ACCTAGGT69546701.711514961236875No Hit
ACTCCGTT68509721.685995320700323No Hit
GGCCTAAG66297191.6315458903580433No Hit
CGCGATTA64069251.5767172264136997No Hit
TACACACA63856081.5714712026011122No Hit
AGTTACAT62839421.5464516286962242No Hit
GGTGTACG62492231.537907429195862No Hit
GTGGACAC61711931.518704575225032No Hit
TACTCAAT59276101.458759826041683No Hit
AGTGTCTC53735191.3224003673776916No Hit
ATAAGCCA44604001.0976856318273844No Hit
CCACTACA38210350.9403406013383442No Hit
GATTACGC36448340.8969782782252564No Hit
TAGGCATT33289550.8192417882925143No Hit
TATCCGAC32121120.7904872186844955No Hit
TCGCAACA19958060.4911594408830789No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)