FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001848246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001848246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21821360
Sequences flagged as poor quality0
Sequence length70
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1875800.8596164492038992No Hit
GCACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATTATAACTAAAAATGGGATATATTCCT552880.2533664262905703No Hit
GGCATCATTATAACTAAAAATGGGATATATTCCTTATAAACTACTGCTAAGACAGCTAAGAAAGCTCCAA484100.2218468509753746No Hit
TTGGCCATTTAAGTTTAGTAGTAAAAGACTGGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGAA440690.20195349877367863No Hit
GACGGCTTACAATAAACGTGATCAAAAACTGCCTGATTTTATACCGACCGCCGGAAGGGATCACATTATG419940.1924444672559364No Hit
GGCCATTTAAGTTTAGTAGTAAAAGACTGGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGAAAG393830.18047912687385204No Hit
TGTGGCAATTATTTTGGATCTATCACCTGTCATCATAACTGGCTTCTGCTTGTCATCCACACAACACCAG342810.1570983660046853No Hit
GGCATCTATCACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAAACTACTGCTAAGACA337930.154862025098344No Hit
TGGGCTATTACATCTCTAAGGAATTGGTGAAGTAAAATGGTGAAGCTTATGAATTTGTGGAGTGAGAGGA301140.1380023976507422No Hit
GAGGCATCTATCACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAAACTACTGCTAAGA279150.12792511557483127No Hit
TGGCCATTTAAGTTTAGTAGTAAAAGACTGGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGAAA274620.12584916797119886No Hit
GGGCCTATGGTGGTTCCATGTGTGCTAAATGTGTTCGTGACAGGATCAAGCGTGCTTTCCTTATCGAGGA242000.11090051215872888No Hit
GGCCTTTGTAAAATTGACAGAGAGGGGAAACCCCGTAAAGTGGTTGGTTGCAGTTGTGTAGTAGTTAAGG238310.10920950848159784No Hit
GCTGGCTGTCCTGAAATATTATAAGGTGGATGAGAATGGCAAAATTAGTCGCCTTCGTCGAGAGTGCCCT231070.10589165844841934No Hit
TCATGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATCCATAAAACTGTAACT219800.1007269941011926No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)