FastQCFastQC Report
Sat 1 Apr 2023
EGAF00001848247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001848247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22012350
Sequences flagged as poor quality0
Sequence length70
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1847330.8392243445156924No Hit
GGCATCATTATAACTAAAAATGGGATATATTCCTTATAAACTACTGCTAAGACAGCTAAGAAAGCTCCAA552910.251181722987323No Hit
GCACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATTATAACTAAAAATGGGATATATTCCT503780.22886243404270784No Hit
GACGGCTTACAATAAACGTGATCAAAAACTGCCTGATTTTATACCGACCGCCGGAAGGGATCACATTATG501360.22776305119626025No Hit
TTGGCCATTTAAGTTTAGTAGTAAAAGACTGGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGAA427940.194409047648252No Hit
GGCATCTATCACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAAACTACTGCTAAGACA353400.1605462388159374No Hit
GGCCATTTAAGTTTAGTAGTAAAAGACTGGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGAAAG339460.15421343018805353No Hit
TGTGGCAATTATTTTGGATCTATCACCTGTCATCATAACTGGCTTCTGCTTGTCATCCACACAACACCAG337990.1535456232524015No Hit
TGGGCTATTACATCTCTAAGGAATTGGTGAAGTAAAATGGTGAAGCTTATGAATTTGTGGAGTGAGAGGA294840.13394299109363605No Hit
GAGGCATCTATCACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAAACTACTGCTAAGA288540.13108096136941308No Hit
GGCCTTTGTAAAATTGACAGAGAGGGGAAACCCCGTAAAGTGGTTGGTTGCAGTTGTGTAGTAGTTAAGG269000.12220412631999765No Hit
GCTCCAATTGGTAGAGTTCCAACATCTCCTGGAAAAACCTTTGCTGGATATTTGTTAAATATCAATAGCC257260.11687075664342972No Hit
GCTGGCTGTCCTGAAATATTATAAGGTGGATGAGAATGGCAAAATTAGTCGCCTTCGTCGAGAGTGCCCT245690.11161461634037256No Hit
TCATGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATCCATAAAACTGTAACT224620.10204271692936011No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)