FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001851084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001851084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1500304
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG19160.1277074512898719No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT18570.12377491495057001No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC16710.11137742750802504No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)