FastQCFastQC Report
Thu 9 May 2024
EGAF00001856300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001856300
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1702970
Total Bases171.9 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC33150.19465991767324145No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT22520.1322395579487601No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)