FastQCFastQC Report
Sat 10 Sep 2022
EGAF00001863821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001863821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1734886
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG22530.12986444066065436No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA21660.12484970194006983No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT17460.10064061846138594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)