FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001865299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001865299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1358391
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG22820.1679928680328418No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA16790.12360211456053521No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT13650.10048653149203728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)