FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001866603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001866603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1855643
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG30760.1657646433069292No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA23640.12739519401091698No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT19480.10497708880425816No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)