FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001867417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001867417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences864655
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT55410.6408336272848708No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33770.39056039692131544No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT22860.26438290416408855No Hit
GTATCAACGCAGAGTACATGGGCAGAAATCACATTGCGTCAACACCACTT20500.23708878107453263No Hit
TATCAACGCAGAGTACATGGGCAGAAATCACATTGCGTCAACACCACTTT13170.15231508520739484No Hit
GTCCTAAGAGATAGGGAAACTCCGTTTTAAAGCGCCTGCTTGTTCAGGCC12790.14792026877772058No Hit
TCGCAATGCTATGTTTTAATTAGACAGTCAGATTCCCCTTGTCCGTACCA12260.14179065638896438No Hit
ACATTATTCTATGGACTAGAGGCTGATCACCTTGGGGACCTGATGCGGTT11660.1348514725526366No Hit
ATGTAGATAAGGGAAGTCGGCAAAATAGATCCGTAACTTCGGGAAAAGGA11400.1318444928902279No Hit
TATCTACATTGTTCTATCAACTAGAGGCTTTTCACCTTGGAGACCTGCTG10860.12559922743753288No Hit
GTACATGGGCAGAAATCACATTGCGTCAACACCACTTTCTGGCCATCGCA10520.12166702326361382No Hit
GGTTAATATTCCACAACCGGGATGTAGATTATTGAACGGCAACGTAAATG10100.11680959457818435No Hit
GTTTTAATTAGACAGTCAGATTCCCCTTGTCCGTACCAGTTCTAAGTTGG10100.11680959457818435No Hit
GTTTTAATTAGACAGTCAGATTCCCCTTGTCCGTACCAGTTCATAGTTGA10000.1156530639387964No Hit
GCCTAAGGCCGCGAGCCAAGGTGCCAACCGGATCCGCCCCAGCTTGCGCC9700.1121834720206325No Hit
GGTATCAACGCAGAGTACATGGGCAGAAATCACATTGCGTCAACACCACT9690.11206781895669372No Hit
ATTCTATGGACTAGAGGCTGATCACCTTGGGGACCTGATGCGGTTATGGG9580.11079563525336696No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8810.10189034933007964No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8730.10096512481856926No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)