FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001867418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001867418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences864655
Sequences flagged as poor quality0
Sequence length151
%GC48

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACATGGGCAGAAATCACATTGCGTCAACACCACTT19210.2221695358264279No Hit
TATCAACGCAGAGTACATGGGCAGAAATCACATTGCGTCAACACCACTTT12520.1447976360513731No Hit
GTCCTAAGAGATAGGGAAACTCCGTTTTAAAGCGCCTGCTTGTTCAGGCC11810.13658626851171854No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11500.13300102352961585No Hit
TCGCAATGCTATGTTTTAATTAGACAGTCAGATTCCCCTTGTCCGTACCA11300.13068796225083995No Hit
ACATTATTCTATGGACTAGAGGCTGATCACCTTGGGGACCTGATGCGGTT10630.12293920696694058No Hit
ATGTAGATAAGGGAAGTCGGCAAAATAGATCCGTAACTTCGGGAAAAGGA10050.11623132925849039No Hit
GTACATGGGCAGAAATCACATTGCGTCAACACCACTTTCTGGCCATCGCA9610.11114259444518335No Hit
GTTTTAATTAGACAGTCAGATTCCCCTTGTCCGTACCAGTTCTAAGTTGG9060.10478167592854953No Hit
GTTTTAATTAGACAGTCAGATTCCCCTTGTCCGTACCAGTTCATAGTTGA8810.10189034933007964No Hit
GAATAATGTAGATAAGGGAAGTCGGCAAATTAGATCCGTAACTTCGGGAA8790.10165904320220204No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)