FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001873377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001873377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49322154
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT6462591.3102813798440351No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAA663900.13460482686948344No Hit
CAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCA608090.12328942486980597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)