FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001873429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001873429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23890337
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT911140.3813843228749766No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAA333580.13962967537879437No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG239300.10016602109882336No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)