FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001873438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001873438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19803682
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGG213430.10777288789024184No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA213070.107591103512973No Hit
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAAC198580.10027428232790246No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)