FastQCFastQC Report
Sat 11 May 2024
EGAF00001873479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001873479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47130277
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA6125591.299714406516219No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA660210.14008192652888504No Hit
CAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATC548640.11640924580180168No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)