FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001873557

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001873557
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44962096
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT4176280.9288445983479061No Hit
CTCGTCCAACCAGCTGCCACGTCCTGTAACCAAAAGTGACCGGGATGAATG694590.15448345646519682No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAA586460.13043431071362865No Hit
CTCACACTCACGCACACTCGCACCGAGACTCAAGGCCGTCTCCACAACTCC471480.10486165947423803No Hit
CTCAGACCGCGTTCTCTCTCTCTCACTCCCCAATACGGAGAGAAGAACGAT468470.10419220669783721No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)