FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001873593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001873593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50796902
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT7642871.5045937250267742No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAA944180.18587354008321216No Hit
CAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCA793330.1561768471628447No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)