FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001878256

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001878256
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28129609
Sequences flagged as poor quality0
Sequence length50
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCC447500.15908504096164294TruSeq Adapter, Index 5 (100% over 48bp)
ACTTCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTA437920.15567937684451996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)