FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001878274

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001878274
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28200970
Sequences flagged as poor quality0
Sequence length50
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTA1256930.44570452718470327No Hit
GACGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC585400.20758151226713123TruSeq Adapter, Index 2 (100% over 48bp)
AATTAATTAATTAATTAATTAATTAATTAATTAATTAATTAATTAATTAA390470.13845977638357831No Hit
TAATTAATTAATTAATTAATTAATTAATTAATTAATTAATTAATTAATTA337940.11983275752571632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)