FastQCFastQC Report
Fri 2 Jun 2023
EGAF00001878318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001878318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40855638
Sequences flagged as poor quality0
Sequence length101
%GC19

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC3275100.8016274277738606TruSeq Adapter, Index 6 (100% over 50bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATG1752240.4288857268610027TruSeq Adapter, Index 6 (100% over 49bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)